Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq223 102 8e-17 seq1 95.1 1e-14 seq247 89.7 5e-13 seq253 84.2 2e-11 >seq223 Length=128539186 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | |||||||| || ||||||||||| || ||| || Sbjct 120277938 CAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 120277997 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| |||||||| || | | |||| | | ||| || || ||||| |||||||| Sbjct 120277998 TCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTC 120278057 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || ||| || | | || | || ||| | |||||||| |||| || Sbjct 120278058 CTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGGGT 120278117 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || |||||||| || || | ||| |||||||| Sbjct 120278118 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 120278156 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| |||||||| || | | Sbjct 120278191 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTTCCAGCA 120278250 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | |||||| || ||||| |||||||| ||||| || ||| || | Sbjct 120278251 AAGATCAACCTCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTTGCCTTGACA 120278310 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| |||| || | || || |||||||| || || Sbjct 120278311 TTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 120278370 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 120278371 ACGAAGATCTGCAT 120278384 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | |||||||| || ||||||||||| || ||| ||| |||||| Sbjct 120278404 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 120278463 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| || | ||| || || ||||| |||||||| || || Sbjct 120278464 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 120278523 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| || | | ||| | || || | ||||| || || | || | || || Sbjct 120278524 ATCTTTGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTG 120278583 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| || | ||| |||||||| Sbjct 120278584 CCAGTCAGAGTCTTCACGAAGATCTGCAT 120278612 >seq1 Length=126035930 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||| ||||| | |||||||||||||||||| ||| ||||| || ||||| | Sbjct 62620387 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 62620446 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| || ||||| || | |||||| ||||||| ||||| Sbjct 62620447 TGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGG 62620486 >seq247 Length=91754291 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||||| |||| || | | | |||||||| || ||||||||||| | || Sbjct 30514622 CGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTG 30514681 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| |||||||| |||| | | || |||||||| || || || || || || Sbjct 30514682 CGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCC 30514741 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || |||||| ||| | | || | || || | ||||| || |||| Sbjct 30514742 TCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGG 30514801 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||||| || || || || || | || ||||||||| Sbjct 30514802 GTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 30514843 >seq253 Length=75148670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| ||||| || | | | ||||| || || ||||||||||| | || || Sbjct 15288050 CAGGCGCAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCG 15288109 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || || | | |||| || | ||| || || || || |||||||| Sbjct 15288110 GCCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCGGGGGGAATGCCTTC 15288169 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| ||||| |||| | ||| | || || | |||||||| || | || Sbjct 15288170 CTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGT 15288229 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || ||||| || || | ||| |||||||| Sbjct 15288230 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 15288268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476599260889440