Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq270 107 6e-20 seq223 98.7 3e-17 seq84 98.7 3e-17 seq68 98.7 3e-17 seq1 98.7 3e-17 seq233 84.2 7e-13 >seq270 Length=71996105 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 43783454 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 43783513 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 43783514 CCGGGTTTCGGC 43783525 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 43601999 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 43602058 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 43602059 CCGGGTTTCGGC 43602070 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| | Sbjct 43759771 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGATTCAATC 43759830 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 43759831 CCGGGTTTCGGC 43759842 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 43799435 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 43799376 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 43799375 CCGGGTTTCGGC 43799364 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCT-AAAGGTCCCTGGTTCAAC 2827 || ||| |||||||||||||||||| ||||||||||||||| |||||||||||| |||| Sbjct 43742179 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTCAAAGGTCCCTGGCTCAAT 43742238 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 43742239 CCCGGGTTTCGGC 43742251 Score = 93.3 bits (102), Expect = 1e-15 Identities = 67/75 (89%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGA--AGATCT-AAAGGTCCCTGGTTCA 2825 |||||| ||||||| |||||||||| ||||||||| |||||| |||||| ||||||||| Sbjct 43800153 GCTGAAATAGCTCAATTGGGAGAGCGTTAGACTGACCAGATCTTAAAGGTACCTGGTTCA 43800212 Query 2826 ACCCCGGGCTTCAGC 2840 |||||||| |||||| Sbjct 43800213 ACCCCGGGTTTCAGC 43800227 Score = 86.0 bits (94), Expect = 2e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||| |||| |||||||||||||||||| |||||||||| ||||| || |||||||| Sbjct 44862130 ATGGTTGAAATAGCTCAGTTGGGAGAGCTTTAGACTGAATATCTATGGGCTTCTGGTTCA 44862071 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| |||||| Sbjct 44862070 ATCCCGGGTTTCAGC 44862056 >seq223 Length=128539186 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 120292074 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 120292015 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 120292014 CCGGGTTTCGGC 120292003 >seq84 Length=50890351 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1152105 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1152046 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1152045 CCGGGTTTCGGC 1152034 >seq68 Length=92142175 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 73378433 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 73378374 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 73378373 CCGGGTTTCGGC 73378362 >seq1 Length=126035930 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 14061832 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 14061891 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 14061892 CCGGGTTTCGGC 14061903 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 14070335 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 14070394 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 14070395 CCGGGTTTCGGC 14070406 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 14061712 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 14061771 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 14061772 CCGGGTTT 14061779 >seq233 Length=98384682 Score = 84.2 bits (92), Expect = 7e-13 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||||| ||||||||||||||||||||||||||||| | || || Sbjct 3670045 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTTGATCCTGG 3669986 Query 2833 GCTT 2836 | || Sbjct 3669985 GTTT 3669982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849252596580