Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq331 279 6e-70 seq373 159 4e-34 seq283 149 7e-31 >seq331 Length=101219884 Score = 279 bits (308), Expect = 6e-70 Identities = 252/317 (79%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||||||||||||||||| || | || |||| |||| || || ||| | | |||||| Sbjct 68447457 CAAGTGGTGACCCAGGATGAAAGAGAGCAGCTGTACACTCCTGCTTCCTTAAGATGCTCT 68447398 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| | | | ||||| || |||||||| || |||||||||| || | | ||| Sbjct 68447397 CTGCAAAATGCCCAGGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 68447338 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || |||||| | || || ||| | |||| ||||||||| ||||||| || ||||||||| Sbjct 68447337 GAAAACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGAC 68447278 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |||| Sbjct 68447277 AAGATAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACC 68447218 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || |||||||| |||||||| ||||| Sbjct 68447217 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTCTGGGAAGATCTCA 68447158 Query 171369 GGGGTGGCCTGCCTCAC 171385 || ||||||||||| Sbjct 68447157 GGAACAGCCTGCCTCAC 68447141 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | || || | ||||| | ||||| | | ||||||| Sbjct 7697187 GTATTCCCTGGTGTTCACTGTGGGCCTCTTGGGCAACGTGGTGGTGGTGATGATCCTCAT 7697246 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| ||||||| | || ||||||||||||| |||| ||||||||||| || || Sbjct 7697247 AAAATACAGGAGGCTCCGAATTATGACCAACATCTACCTGCTCAACCTGGCCATTTCGGA 7697306 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | |||||||| || || ||||| |||| Sbjct 7697307 CCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 7697344 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||| ||| | |||| | |||| || ||||||| || | ||||| | Sbjct 7636669 GTACTCCTTGGTATTTGTCATTGGCGTGGTTGGAAACCTCCTGGTGGTCTTGGTCCTTGT 7636610 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||||||||| ||| | ||||||||| || ||| Sbjct 7636609 GCAATACAAGAGGCTCAAAAACATGACCAACATCTACCTTCTGAACCTGGCCATTTCTGA 7636550 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCG 8775 |||||| | | ||||| || ||||| | ||| ||| | | ||| Sbjct 7636549 CCTGCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTCG 7636504 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 9196 GCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAAC 9255 ||| || ||||||||| |||| ||| | | ||| | || |||| |||||||| Sbjct 7697776 GCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTTTCTGGACACCCTACAAT 7697835 Query 9256 GTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCGCGG 9315 || || || | ||||| ||| | | ||||| | ||||||||| ||| Sbjct 7697836 GTGGCTATCCTTATCTCTACCTATCAATCCATCTTATTTGGACTTGACTGTGAA---CGG 7697892 Query 9316 CGCAGG---GTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGC 9372 ||| | |||||| ||| | | ||||| | ||| |||| |||| | ||||||||||| Sbjct 7697893 AGCAAGCATGTGGACCTGGTCGTGCTGGTGACAGAGGTGATTGCCTACTCCCACTGCTGC 7697952 Query 9373 GTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 || ||||| || |||||||| ||||| || || | ||||| Sbjct 7697953 GTGAACCCAGTGATCTACGCCTTTGTTGGAGAGAGGTTCC 7697992 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | ||||| | | ||||| ||||| |||| |||| ||| Sbjct 7814813 TACTCACTGGTGTTCATCTTTGGTTTTGTGGGCAACATACTGGTCGTCCTCATCCTGATA 7814872 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| ||||| | | |||||| |||||| |||| ||||||||||| | |||| Sbjct 7814873 AACTGCAAAAGGCTGAAAAGCATGACTGACATCTACCTGCTCAACCTGGCCATCTCTGAC 7814932 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||||| | || | || ||||||| ||| ||||| Sbjct 7814933 CTGCTTTTCCTTCTTACTGTCCCCTTCTGGGCTCACT 7814969 >seq373 Length=85787240 Score = 159 bits (176), Expect = 4e-34 Identities = 134/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 22592357 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 22592416 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| ||| | ||| ||||| ||||||||||| |||| Sbjct 22592417 TGCCCCAAGCTGAGAACCAC------------GACCCAGACATCAAGGAGCATGTGAACT 22592464 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| || || |||||||| || ||||||||||||| ||| Sbjct 22592465 CCCTGGGGGAGAATCTGAAGACCCTCAGGCTGAGGCTGCGGCGCTGT 22592511 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 22594742 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 22594801 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 22594802 TAGAAGCCTACATGACAA 22594819 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 ||||||||||| |||||||||||||| |||||||| | |||| ||||||| ||||||||| Sbjct 22592005 CAAATGAAGGATCAGCTGGACAACATATTGTTAAAGGAGTCCTTGCTGGAGGACTTTAAG 22592064 Query 178233 G 178233 | Sbjct 22592065 G 22592065 >seq283 Length=72318688 Score = 149 bits (164), Expect = 7e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 60039746 CTTCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAA 60039687 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| ||||| ||||||||||||||||| || ||||| | || Sbjct 60039686 AGGCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTT 60039627 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| ||| ||||| || ||||| ||||| Sbjct 60039626 CACCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 60039582 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| |||| ||| || | |||| Sbjct 60035545 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCTCTGGCG 60035486 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | ||||| || |||| || | ||| ||||| || ||||||| Sbjct 60035485 GAGAACCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCATCCCATATTTTCACTCCC 60035426 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || ||||| || | | ||||| ||| ||| || Sbjct 60035425 TTGGAAGACAGCTCTTTCGCATTTGTGGATCCCTGGAAGA 60035386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583473383625600