Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq423 248 1e-60 seq240 125 1e-23 seq113 120 4e-22 seq1 114 2e-20 seq127 98.7 1e-15 seq84 93.3 6e-14 >seq423 Length=130038232 Score = 248 bits (274), Expect = 1e-60 Identities = 510/754 (68%), Gaps = 11/754 (1%) Strand=Plus/Plus Query 39449 CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 39508 || |||| ||||| || |||||| ||| | | |||||||| || ||||| || Sbjct 41477915 CTGTCTGTCACAAACTCAATGTATTGCTTCCTTAGAGTGCAATTCATCCCAATGAGCTTC 41477974 Query 39509 ACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGAT 39568 || || | ||||| || || || || | ||| || || || | | ||| | | Sbjct 41477975 ACAGGCAAGGCCTCAGTGAGGAAGTCCTGTTCTATCCGAACAGCATTGATAATTCTTTCT 41478034 Query 39569 GTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCA 39628 ||| | ||| || ||| || | | || || ||||| | ||| || || ||| Sbjct 41478035 CTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAATCA 41478094 Query 39629 CAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGA 39688 || |||| ||||||||||| || || | ||| || ||||||||||| |||||||| || Sbjct 41478095 CAGTGTAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 41478154 Query 39689 CCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACT 39748 || || || |||||||| ||||| | |||||| | |||||||||| ||||||| || Sbjct 41478155 CCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCGCT 41478211 Query 39749 GCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCTGTGC- 39807 || ||||| | |||| | || || || | | | ||| ||| ||| | | |||| Sbjct 41478212 GCAGCAAAGACTACAACACGTTCCCCATAGGTAGC-TGATT-TGTCCCCAATCCAGTGCA 41478269 Query 39808 ----CCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||| || ||||| || ||||||||||| ||||| || ||||| ||| || | | Sbjct 41478270 AGGCCCAATCTGCCTTCTTTTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 41478329 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| | |||||| | || || || | | | |||||||||| | ||||| | Sbjct 41478330 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTAAGGAAACTATACATTCCAGAATGTA 41478389 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||||||| || || || || || || | ||||| | ||||| || | || || ||| Sbjct 41478390 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 41478449 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | ||||| ||| |||| ||| |||| ||||| |||||||| || ||||| || ||| Sbjct 41478450 GGCTAAATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCA 41478508 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 ||||| ||||||| | | || ||||| ||| | ||||| || || | Sbjct 41478509 GAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAAATGTCCT 41478568 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 | || | || || || || | ||||| || || || || ||||| || |||| | || Sbjct 41478569 TGGACAGGTCCACCTCCTCGGAGGTCCAGAAGGAAGCTTCCGCCTTCTTACACATCTGCC 41478628 Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | |||||| | || | | || || || ||||| Sbjct 41478629 AGATATCATGGTACTCGTTGGGGAAGATGACAAA 41478662 Score = 223 bits (246), Expect = 5e-53 Identities = 335/466 (72%), Gaps = 14/466 (3%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||| ||| |||| |||||||| || ||||| | ||| || |||||||||| Sbjct 119131890 GCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAG 119131831 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| || || | || |||||||| ||||| |||||||| ||||||||||| Sbjct 119131830 GCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAA 119131771 Query 39736 GATGCCTTCTACTGCTGCAAA---TGCAACAAG-TCTCTCTCCGTAACTTGTATCATTAT 39791 | ||| ||| ||| ||||| ||||||| | |||| | ||||| | | | || Sbjct 119131770 GGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCT-TTGTTCC 119131712 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | ||||| | || |||||||| |||| |||||||||||| || |||| Sbjct 119131711 CAATCCAACACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCAT 119131653 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | |||||| | | |||| | |||||||| || ||| || || | ||||||| | Sbjct 119131652 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTA 119131595 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || ||||| |||||||| || || || || || || || || || | ||| |||| Sbjct 119131594 TGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 119131535 Query 39972 TTTGTACCTC-TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030 | || | || ||||| |||| |||| ||| ||||||| ||||| ||||||| || Sbjct 119131534 TCTGAATTTCTTGAAC-AAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCT 119131476 Query 40031 GCAAAAAATGCC--AATACATGTTTAATAAAATATTTTTCATCGGG 40074 ||||| || ||| |||| | | | ||||||||| |||| || || Sbjct 119131475 GCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGG 119131432 >seq240 Length=107702431 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || ||||||||||| |||||||| || || || || | Sbjct 97514985 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 97515044 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| | Sbjct 97515045 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 97515104 Query 39759 CAAC 39762 | || Sbjct 97515105 CTAC 97515108 >seq113 Length=139301422 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| || Sbjct 97069731 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 97069790 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 97069791 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 97069850 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 97069851 ACCACTCTTTCCCC 97069864 >seq1 Length=126035930 Score = 114 bits (126), Expect = 2e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| |||||||| || || | || || |||||||| || | Sbjct 62638621 CACTGAACACTTTCTTTGTTTCTTTGTGTAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 62638680 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| || | ||||| | || || ||| |||| ||||| || ||||||| Sbjct 62638681 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 62638740 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || | ||||| || |||||||||| Sbjct 62638741 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 62638788 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | ||| ||||| || || || | || | || || ||||| || || || | Sbjct 62616522 GAGCCCTCATAGGTTTCGTATGGGCCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGG 62616581 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || |||||||| ||||| || |||| |||||| || ||| |||||| ||| || Sbjct 62616582 GCGCCATAATAAATAGTTTCAAAGATCTGCTTATTCAGTAATTGGGCTTCTGCACTCTCA 62616641 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || || | || ||||| |||||||||| || ||||||||||| || || || Sbjct 62616642 AAAGGGTATCTCATCAGGATAAAAGCATCTGCCAGACCTTGAACCCCAATTCCAATGGGG 62616701 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 62616702 CGATGACGTTTATTTGA 62616718 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || |||||||||| | | Sbjct 62622022 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 62622081 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || || || | || || ||||||| || Sbjct 62622082 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 62622141 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 62622142 TCCAGGTAAATAGC 62622155 >seq127 Length=125710982 Score = 98.7 bits (108), Expect = 1e-15 Identities = 175/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406 ||| || || ||||| ||| | || || || || |||| | || ||| ||||| | Sbjct 85916273 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTGTCATCCAAAGCTTGAACTTCTTC 85916332 Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466 | || |||||| | || |||| | || ||||| || |||| ||| ||| | || | Sbjct 85916333 TATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 85916392 Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526 || ||| || ||| ||| || | ||| | || |||| ||| || ||||||||||| Sbjct 85916393 TTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 85916452 Query 37527 ATCGATTACTCCGCCTCCTACATCAATA----CCTTTTAGAGACAAACCCGATCTAGGAG 37582 ||| || || || |||||||||||||| ||| || ||| || || |||| Sbjct 85916453 ATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAAGCCAAGCCTGACTGTGGAG 85916512 Query 37583 CTATTCTTCCATAAC 37597 ||| ||||||||||| Sbjct 85916513 CTACTCTTCCATAAC 85916527 >seq84 Length=50890351 Score = 93.3 bits (102), Expect = 6e-14 Identities = 185/266 (70%), Gaps = 11/266 (4%) Strand=Plus/Minus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACCATCTAGAGAT 37395 ||| ||| ||| || || ||||| ||| ||| | ||| | ||| |||| | || | Sbjct 45216048 TTAATTCTTTCCAGTAGAACCAAAACCTCCTGAACCCCTTTTGGTGT--CATCCAAAGCT 45215991 Query 37396 TGTACTTCATTCAGAT-CAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 37454 || ||||| ||| | | | ||||| | || |||| | | || ||||| || |||| ||| Sbjct 45215990 TGAACTTC-TTCTGTTTCTGGATAGAACATCCGTTCACAAATGAGCTGTGCAATTCGATC 45215932 Query 37455 GCCCGTATTT-ATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCC 37513 || ||||| | || ||| || ||| ||| ||| | | | || |||||||| | Sbjct 45215931 ACCT-TATTTGACTTCAAACTTTTCTTTGCCAAAATTGAAGACTACAACACCAATATTTC 45215873 Query 37514 CCCTATAATCTTCATCGATTACTCCGCCTCCTACATCAATACC---TTTTAGAGACAAAC 37570 | ||||||||||||| | | || || |||||||||| | | | |||| || ||| | Sbjct 45215872 CTCTATAATCTTCATTGGTGACACCAGCTCCTACATCTACAACGTGTTTTGCAGCCAAGC 45215813 Query 37571 CCGATCTAGGAGCTATTCTTCCATAA 37596 | || | ||||||| |||||||||| Sbjct 45215812 CAGACCGTGGAGCTACTCTTCCATAA 45215787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686891592934560