Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq423 210 2e-49 seq240 109 4e-19 seq283 98.7 8e-16 seq270 86.0 5e-12 seq113 86.0 5e-12 seq253 82.4 6e-11 >seq423 Length=130038232 Score = 210 bits (232), Expect = 2e-49 Identities = 605/912 (66%), Gaps = 43/912 (5%) Strand=Plus/Minus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | |||||| | | | |||||| | || || | | || ||||| || |||| Sbjct 41478685 TGCTGAGAGAAAACGCCTGCCGTTTTGTCATCTTCCCCAACGAGTACCATGATATCTGGC 41478626 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | |||| || || || | || || || ||||| | || || || || || | || | Sbjct 41478625 AGATGTGTAAGAAGGCGGAAGCTTCCTTCTGGACCTCCGAGGAGGTGGACCTGTCCAAGG 41478566 Query 43797 AC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || || |||| | ||| | | | || || | || | | |||||||||| ||| | Sbjct 41478565 ACATTTGGCAC-TGGGAATCCCTGAAGCCCG-AGGAGAGAGATTTTATATCCCATGTTCT 41478508 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 || || ||||| || || || || ||||| |||| ||| ||||| || ||| || Sbjct 41478507 GGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATGCAAACTTGGTGGAGCGATTTAGCCA 41478449 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||||||| | ||||||| || ||||| | ||| || ||||||||||| ||||| || Sbjct 41478448 AGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATGGAAAACAT 41478389 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||||| | |||||| ||| | || | || || ||||| |||||| | || | | | Sbjct 41478388 ACATTCTGGAATGTATAGTTTCCTTACTGACACTTACATAAAAGATCCCAAAGAAAGGGA 41478329 Query 44035 ---TCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGC 44091 ||| || ||||| || ||||| | ||| | ||| | || ||||| ||||| Sbjct 41478328 ATTTCG---CTTCAATGCCATTGAAACGATGCCTTGTGTCAAAAAGAAGGCAGATTGGGC 41478272 Query 44092 CCTTAAATGGA-TAAATTCAAAT--GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148 | | | |||| | ||||| | | | | ||| ||||| |||| | ||||| | Sbjct 41478271 CTTGCACTGGATTGGGGACAAATCAGCTACCTATGGGGAACGTGTTGTAGTCTTTGCTGC 41478212 Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 | |||||||| ||||||| || | ||||| | ||||| ||| | ||||||||||| Sbjct 41478211 AGCGGAAGGCA---TCTTTTCTGGTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGG 41478155 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 |||||||||| | || ||||| ||||| | || || | ||||| || ||||| || Sbjct 41478154 ACTGATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGATGAGGGTTTACACTG 41478095 Query 44269 CGATTTTGCTTGCTTGTTACTTGGAT-ATCTAGGAGACGATAAGCCTTCATGTA--AGAC 44325 |||||||||||| || | || || | || | | || || || | || | ||| Sbjct 41478094 TGATTTTGCTTGCCTGAT-GTTCAATCACCTGGTACAC---AAACCAT--TGGAGGAGAG 41478041 Query 44326 AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATT 44385 ||| | ||| | || | | || || ||||||||| || || | || || || Sbjct 41478040 AATAAGAGAAAGAATTATCAATGCTGTTCGGATAGAACAGGACTTCCTCACTGAGGCCTT 41477981 Query 44386 ACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTG 44444 ||||| || | || || ||||| || || | | | ||| ||||| ||||| | | Sbjct 41477980 GCCTGTGAAGCTCATTGGGATGAATTGCAC-TCTAAGGAAGCAATACATTGAGTTTGTGA 41477922 Query 44445 CAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCCG 44500 |||| | | |||||||||||| | | || | || ||| | ||||| Sbjct 41477921 CAGACAG--GCATGCTGGAACTGGGTT----TTAGCAAGGTTTTCAGAGTAGAGAACCCA 41477868 Query 44501 TTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTT 44560 ||||| |||||||| |||||||| || ||| || ||||| ||||| || | || Sbjct 41477867 TTTGACTTTATGGAGAATATTTCACTGAAAG-----ACGAACTTCTTTGAGAAGAGAGTA 41477813 Query 44561 GGAGAATATCAG 44572 | || |||||| Sbjct 41477812 AGGGAGTATCAG 41477801 >seq240 Length=107702431 Score = 109 bits (120), Expect = 4e-19 Identities = 90/107 (84%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 97517564 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 97517506 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAG 44018 || ||||| |||||||| |||||||| || || || ||||| |||| Sbjct 97517505 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAG 97517459 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 97515120 GGTGAACGTGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 97515061 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 97515060 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 97515001 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 97515000 ATCAGCAGAGATGA 97514987 >seq283 Length=72318688 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| || || ||| | || ||||| || || || |||| |||| Sbjct 60039580 TGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGT 60039639 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || ||||| || |||||||| ||||| || || || ||||| || | Sbjct 60039640 CCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTCAACATCGCCA 60039699 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||||||||| |||||||| ||| Sbjct 60039700 GCTACGCCCTGCTCACGTACATGATTGCGCAC 60039731 >seq270 Length=71996105 Score = 86.0 bits (94), Expect = 5e-12 Identities = 172/255 (67%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 47231 GGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAAAAACG 47290 ||||| || | |||| || ||| | |||| | || || ||||||||||| ||||| Sbjct 43507936 GGACTCTACAAGAAATTTGGAAAACTTATATTCTTTGGTTTGGACAATGCAGGCAAAACC 43507995 Query 47291 GCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACATTACATCCG 47350 | | || |||||||||||| | | | || | ||| || ||| |||||| | Sbjct 43507996 ACTCTTCTTCACATGCTCAAAGATGACAGACTGGGTCAACATGTTCCAACACTACATCTG 43508055 Query 47351 ACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTTGATTTAGGAGGACAC 47410 || || ||| | |||| ||||||||| || || |||| || |||||| | || | |||| Sbjct 43508056 ACATCAGAAAAGCTAATAATTGCTGGAATGACTTTTACAACTTTTGATCTTGGTGCACAC 43508115 Query 47411 ATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGATGCTATAGTTTATATT 47470 | ||| | || | || |||||||| | | | || ||| || |||| | | Sbjct 43508116 AAGCAACCATGTCAGGTTTGAAAAAATTATCTCCCAGGAATTAATGGGATTGTTTTTCTG 43508175 Query 47471 GTAGACTGTGCAGAT 47485 || |||| ||||||| Sbjct 43508176 GTGGACTCTGCAGAT 43508190 >seq113 Length=139301422 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 97058869 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 97058810 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| || |||||||| Sbjct 97058809 AACGAGTTTCGGAGTATCAGCG 97058788 >seq253 Length=75148670 Score = 82.4 bits (90), Expect = 6e-11 Identities = 115/162 (71%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 60405407 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 60405466 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||||||||| || | ||||| ||| | Sbjct 60405467 AGCATGGCTGGTAGCACGGGAGTTCATGACACTGTTGTCAACCAGTTGCTGTCCAAAATT 60405526 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || ||||| | || || || || || |||| ||||| ||| Sbjct 60405527 GATGGTGTGGAGCAGCTAAACAACATCCTAGTCATTGGTATG 60405568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446292634020