Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq233 89.7 6e-13 seq127 89.7 6e-13 >seq233 Length=98384682 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 32674 TGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGA 32733 |||||| || ||| | |||||||| | || ||| | || || | || || || ||| Sbjct 4660105 TGTGGTGGTACTTTGTTTCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATTCTGA 4660046 Query 32734 GAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTT 32793 |||||||| ||||||||| || | || || || || || | ||| |||||||| | Sbjct 4660045 GAAAGAAAAACAACCAAGTTTCTTTCCTTCATGTGTATCATCACTGTACGATGTTTACCT 4659986 Query 32794 TAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 | | ||||| || ||||| ||| ||||||||||||| Sbjct 4659985 TGTGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 4659949 >seq127 Length=125710982 Score = 89.7 bits (98), Expect = 6e-13 Identities = 141/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || ||| | || || ||||| | || ||| ||| Sbjct 85916325 ACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCC 85916384 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | ||| || || | ||| ||||| | | | ||| | |||||| || Sbjct 85916385 TTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTA 85916444 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATG-ATTACATGCCAATCCCGA 22813 |||||| |||||| ||||| || |||||||| ||||| || || || ||||| || || Sbjct 85916445 TAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAAGCCAAGCCTGA 85916504 Query 22814 TCTAGGAGATATTCTTCCATA 22834 |||| || ||||||||| Sbjct 85916505 CTGTGGAGCTACTCTTCCATA 85916525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603165690320960