Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq247 132 3e-26 seq98 120 2e-22 seq223 82.4 5e-11 >seq247 Length=91754291 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||||||||| || || ||| ||| || || ||||| || ||||| Sbjct 30514615 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 30514674 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || ||||| ||||||||||| | |||||| ||||| || || Sbjct 30514675 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 30514734 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | ||| ||||| | ||| | Sbjct 30514735 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 30514793 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | || | ||| || ||||| || || | || |||||||| ||||||||||| Sbjct 30514794 CCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 30514845 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || || ||| ||| || |||| || ||||| Sbjct 72049806 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCCAGATGTCGTAGTCTGA 72049747 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || ||||| | || || || ||||| ||||||| ||| | | |||| ||||| || || Sbjct 72049746 GAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGG 72049687 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATT-GTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || ||| ||||| | || | Sbjct 72049686 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTAA 72049628 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || || || | || |||||||| |||||||| Sbjct 72049627 CCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAGATCTGCAT 72049579 >seq98 Length=135778131 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34483 CCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGT 34542 |||| || |||||||||| || || ||| ||| || || ||||| || |||| || Sbjct 37173962 CCTCGCAGGCGCAACACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGA 37173903 Query 34543 GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACT 34602 || || | ||||| || ||||| ||||||||||| | |||||| ||||| || || | Sbjct 37173902 GTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATA 37173843 Query 34603 CCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTC 34661 |||||||||||| ||| ||| | ||| ||| | ||| ||||| | ||| || || Sbjct 37173842 CCCTCCTTGTCT-TGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTC 37173784 Query 34662 CACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | ||| || ||||| || | | || ||||||| ||||||||||| Sbjct 37173783 AAGGGTGATGGTTTTGCCCGGGAGGGTCGTCACAAAGATCTGCATGTT 37173736 >seq223 Length=128539186 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| |||| || || ||| ||| || || ||||| || ||||| Sbjct 110883099 GCCACCTCACAGGCGCAGCACCGGGTGCAGGGTGGACTCTTTCTGGATGTTCTAGTCTGA 110883158 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || | || | || || | ||||| || |||||||| | || ||| ||||| ||| | Sbjct 110883159 GAGACTGCGGCCATCCTCTGGCTGTTTGCCCGCAAATATCAGACACTGGTGGTCAGGCAG 110883218 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| || | ||| || | | | ||||| | ||||| Sbjct 110883219 GATGCCCTCCTTGTCTTGGAT-TTCGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCCA 110883277 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || | | || |||||||| |||||||| Sbjct 110883278 CCTCAAGGGTGATGGTCTTGCCCATGAGAGTGTTCACAAAGATCTGCAT 110883326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721913122932