Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq247 138 1e-27 seq98 120 3e-22 seq253 113 4e-20 seq227 95.1 1e-14 seq68 86.0 5e-12 seq77 82.4 7e-11 >seq247 Length=91754291 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || ||||| | || || || || || || || Sbjct 30514843 CATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTCGAGCCCAG 30514784 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| |||||||||||||| || || || ||||| || || Sbjct 30514783 TGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCA 30514724 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | |||| ||||||||||| ||||||| | || | || || ||||| Sbjct 30514723 GCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAA 30514664 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||| | || |||| ||||| |||| |||||||| Sbjct 30514663 CATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCAT 30514613 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || |||||||| || | || Sbjct 72049579 ATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTTAAGCCCAGT 72049638 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | |||| |||||| |||||||||||||| || || || ||||| || || Sbjct 72049639 GACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 72049698 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||| | | ||| ||||||||||| |||| || | || | || || ||| || Sbjct 72049699 CAGCATCTGATACTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTACGAC 72049758 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| ||| | || |||| |||| |||| |||||||| Sbjct 72049759 ATCTGGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGCAT 72049808 >seq98 Length=135778131 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| | || || | ||||| | || || ||||| || || || Sbjct 37173738 CATGCAGATCTTTGTGACGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGCCCAG 37173797 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| |||||||||||||| || || || ||||| || || Sbjct 37173798 TGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCA 37173857 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | |||| ||||||||||| ||||||| | || | || | ||||| Sbjct 37173858 GCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGGCTACAA 37173917 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| || | || |||| ||||| |||| ||| |||| Sbjct 37173918 CATCCAGAAAGAGTCCACGCTGCACCTGGTGTTGCGCCTGCGAGGTAGCAT 37173968 >seq253 Length=75148670 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || ||||| ||||| || Sbjct 15288268 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 15288209 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| || || || |||||||| || ||||| || Sbjct 15288208 GACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 15288149 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 15288148 CAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 15288089 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| |||| || | ||||| || Sbjct 15288088 ATCCAGAAGGAGTCGACCCTGCACTTGGTCCTGCGCCTGAGAGGTGGTAT 15288039 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 15279646 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 15279587 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || ||||||||||| || || || || Sbjct 15279586 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAG 15279527 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 15279526 CAGAGGCTCATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 15279467 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||||||| | || |||| |||| || |||||||| Sbjct 15279466 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGGC 15279419 >seq227 Length=108555830 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || |||||| | ||||| || || || || |||||| | || | ||||| || || || Sbjct 57866936 GCTATGCAGCTCTTTGTGAAGACCCTCACGGGCAAGACCATCATCCTTGAGGTCGAGCCC 57866877 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || | | ||||| ||||| |||||||||||| |||| || || ||||| || Sbjct 57866876 AGTTACACCACTGAGAATTTCAAAGCCAAAATTCAAGACGAAGAGGGTATCCCACCTGAC 57866817 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || |||||| | |||| || ||||| || |||| || | | || | || || ||| Sbjct 57866816 CAGCAGCGTCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCTGCACTCTCTCAGACTAC 57866757 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| ||||| |||| ||| | || |||| Sbjct 57866756 AACATCCAAAAACAGTCCACCGTGCACCTGGT 57866725 >seq68 Length=92142175 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| || || || || || ||||| || Sbjct 7889637 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGATCATCACCCTCGAGGTTGAACCCTCG 7889696 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || || || || || || || ||||| || || || ||||| Sbjct 7889697 GATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 7889756 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || ||||| ||| ||||||| | || |||| || ||||| Sbjct 7889757 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTTTCTGACTACAAT 7889816 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | ||| | || ||| | | || ||||| Sbjct 7889817 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 7889863 >seq77 Length=75399963 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26993 GATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTC 27052 ||| ||||| || || || || |||||| |||| | ||||| || || ||| ||| | Sbjct 34143383 GATCTTTGTGAAGACCCTCACAGGCAAGACTATCGCCCTTGAGGTCGAGCCGAGTGACGC 34143324 Query 27053 GATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCG 27112 | ||||| | |||| |||||||||||||| | ||||| | ||| || || ||| | Sbjct 34143323 CACTGAGAATGCCAAAGCCAAAATTCAAGACAAGTAGGGCATCCTACCTGACCAGCAGTG 34143264 Query 27113 TTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCA 27172 | | ||| |||||| | |||| || | || | || || |||||||| || Sbjct 34143263 TCTGATAATTTGAGGCAAATAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCA 34143204 Query 27173 AAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAAC 27220 || ||||| ||||| || || | || | |||| | |||||| || Sbjct 34143203 GAAAGAGTCCACCTTGCACCTGATGCTGTGCCTGCGCGATGGCATTAC 34143156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434907505294080