Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_029080.1 Length=142096 Score E Sequences producing significant alignments: (Bits) Value seq657 113 4e-20 >seq657 Length=35860 Score = 113 bits (124), Expect = 4e-20 Identities = 291/440 (66%), Gaps = 6/440 (1%) Strand=Plus/Minus Query 100209 GGTAGTGGTGCTGTTTACCTAAATATATTCCACAATGATATCTTGGATTTATTAAGCTCT 100268 || || ||||| | ||| ||| ||| || ||| ||||| | | ||||| ||| | | Sbjct 33430 GGAAGCGGTGCCGCTTATTTAAGTATTTTTCACTATGATTTGGTCGATTTTTTAGATTGT 33371 Query 100269 AAGAAAATCAATGCCAGTGAGTCTGTTAGACTAGATAAATTATCTATTGGTGTTACAATC 100328 |||||||| ||||| ||| |||| || | | |||||||||||| | | | Sbjct 33370 AAGAAAATTAATGCAGATGAAAAATCTAGAATACAGACTTTATCTATTGGTTTAATTGTT 33311 Query 100329 CCTAACAAATTTATGGAGTTAGTTAAAGAAGGTAAACCTTTCTATACTTTTGATACT--T 100386 || | || ||| || | |||| |||||| |||| || |||| || || || | Sbjct 33310 CCAGATAAGTTTTTGCAATTAGCCAAAGAAAATAAAGACTTTTATATCTTCGAGCCTAAT 33251 Query 100387 ACGACATTAATAAARTGTACGGTAAGTATTTAGATGAGCTAAACATTGATGAATGGTATG 100446 || | || ||| | | | | | |||| || |||| ||||||||||||||| Sbjct 33250 ACTATTTTTCAAAAATATTCAATT--TTTTTATCAGATTTAAATTTTGATGAATGGTATG 33193 Query 100447 ATAAGTTACTARATAATGATAGTATCG-GTAAAGTAAAACATGATGCTAGAGAAGTTATG 100505 | || ||| | | ||| | ||| | ||| ||| || |||||| || | Sbjct 33192 ACAAATTAGCAGAAGATGCTGAAATCTTGAAAAAGAAATTATC-TGCTAGGTCTATTTTA 33134 Query 100506 ACAGAYATTGCTAAAACACAATTAGAATCAGGCTACCCTTATGTATTCTATATTGATAAT 100565 || | || ||| |||| || || ||||||||||| || |||||| | | ||| |||||| Sbjct 33133 ACTAAAATAGCTCAAACTCAGTTTGAATCAGGCTATCCATATGTAATATTTATAGATAAT 33074 Query 100566 GCTAATGATAATCACCCATTGAAAAACCTAGGTAAAGTTAAAATGAGTAACTTATGTACA 100625 || ||| | | || || || || |||| || | ||||||||||| ||||| || Sbjct 33073 GCCAATAGACAGAATCCTTTAAAGAAATTAGGAAAGATAAAAATGAGTAATTTATGCACT 33014 Query 100626 GAAATTTCACAATTACAAGA 100645 ||||||| ||| | ||||| Sbjct 33013 GAAATTTTTCAAATTCAAGA 32994 Lambda K H 0.637 0.409 0.918 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454567812791040