Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq657 129 5e-25 >seq657 Length=35860 Score = 129 bits (142), Expect = 5e-25 Identities = 473/717 (66%), Gaps = 44/717 (6%) Strand=Plus/Plus Query 87420 CATAAGTTAGACATTTTGATTTCACCAAGCTCATTTAAAGCATGGTTTTTGTTTGCGTTA 87479 ||||| ||| |||||| || | || | | ||||||| || | | | || || ||| Sbjct 33018 CATAAATTACTCATTTTTATCTTTCCTAATTTCTTTAAAGGATTCTGTCTATTGGCATTA 33077 Query 87480 TCTTTATACATGATATAAGGATAACCAGATTGTAATTGAATTTGAGCGATCAGATTTAAC 87539 ||| || | || | ||| ||||| || |||| || ||| ||||||| || | |||| Sbjct 33078 TCTATAAATATTACATATGGATAGCCTGATTCAAACTGAGTTTGAGCTATTTTAGTTAAA 33137 Query 87540 ATTTCTCTAGCATTAATTTTATGTTTGATAACATTTT--CATTCTCAACGAACTTGTCAT 87597 || |||||| | ||| | ||| | | |||| ||| || | || ||||||| Sbjct 33138 ATAGACCTAGCAGATAATTTCTTTTTCA--AGATTTCAGCATCTTCTGCTAATTTGTCAT 33195 Query 87598 ACCAATCATTAATATTAATGTCATCTAAGATTACATCTTTACCGAATTCTTCTTGAATTG 87657 |||| |||| || ||| | |||| ||| | | || |||| || | || Sbjct 33196 ACCATTCATCAAAATTTAA---ATCT--GATAAAAAAATT---GAATATTTTTGAAAAAT 33247 Query 87658 AGTAT--GGTTCAAACATATATAAGTCTTTGTCTTCTTTTGCTAAAT-CAAAGAATAATG 87714 ||||| || || || ||||| |||||||| | |||||| ||||| | |||| | | || Sbjct 33248 AGTATTAGGCTCGAAGATATAAAAGTCTTTATTTTCTTTGGCTAATTGCAAAAACTTATC 33307 Query 87715 AAGGAACAATTAAACCGATTGAAAGTGTAGCTAAACGTGTATCTTCATCTGCATTAACTT 87774 |||||||||||||| || || | || || | | | |||||||||||||| || Sbjct 33308 T-GGAACAATTAAACCAATAGATAAAGTCTGTATTCTAGATTTTTCATCTGCATTAATTT 33366 Query 87775 TCTTAGTGTTTAATAACTCAATTACATCTGAGTGGAAAATGTTTAAGTAAGCAGCACCAG 87834 ||||| | ||| || || | | ||| |||| ||||| |||| ||||| ||||| Sbjct 33367 TCTTACAATCTAAAAAATCGACCAAATCATAGTGAAAAATACTTAAATAAGCGGCACCGC 33426 Query 87835 CTC--CAGCACGTTGACCTAATTGATCAGCATAA-CTAAC---TTCACCTTCAATTAATT 87888 || | | | || ||||||||||| |||||| | ||| ||| || |||| || Sbjct 33427 TTCCTCTTCTCATT--CCTAATTGATCGGCATAATCAAACACGTTCTCC-AAAATT--TT 33481 Query 87889 TAGCAACTGGTACGATACCTTTACCTACATTCTTAACACCTTTTAAT-GTAGCACCACGA 87947 || ||| |||| | || | || | | | || ||||||| | ||| || | | Sbjct 33482 TA-AAACAGGTAATACTCCCGAAGCTGTACTGTCAA-TTTTTTTAATAGAAGCTCCTCTA 33539 Query 87948 CCTCTTAATCGTGTTAAGTTAACTGCTACACCACCAGCAATCTT--ACTAGCTTG--TGA 88003 || |||||| | ||| |||| || || || || |||| || || | ||| | Sbjct 33540 CCCCTTAATTTGGATAAATTAATAGCCACTCCTCCTCCAATTTTTGACAA--TTGCATAG 33597 Query 88004 TACTTGACTTCTAATGAAGTTGATAGAGTTTAATGTGTCATCCATTGTGAATAAATAACA 88063 | |||| | || |||||||||| || | | || || ||| |||||| |||| Sbjct 33598 AAGTTGAAATTACAT--AGTTGATAGAATTGATGGAATCTTCTATTTCCAATAAAAAACA 33655 Query 88064 AGAAGCTAATTCTCC---TCGTTGCTTACGACCAGCATTTAAATATGTTGGAGTTGC 88117 ||| |||||||||| || || || ||||||||| || | ||||||||||| Sbjct 33656 TGAAACTAATTCTCCGGATCTTTTTTT---CCCAGCATTTGAAAAAGTTGGAGTTGC 33709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408588420494828