Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq283 165 7e-36 >seq283 Length=72318688 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || || ||||| |||||||||| ||||| || | ||| Sbjct 60039570 GATCTTCCTCTGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAAC 60039629 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 | ||||||||||||||||| || || |||||||||||||||| |||| ||||| ||| Sbjct 60039630 AGTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTC 60039689 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| ||||||||||||||||| || || Sbjct 60039690 AACATCGCCAGCTACGCCCTGCTCACGTACATGATTGCGCA 60039730 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || ||||||||||||||||| ||||| || || |||||||| ||||| |||| ||| Sbjct 60039730 TGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCC 60039671 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||||| || || ||||||||||||||||| | ||| | || ||||| ||| Sbjct 60039670 ATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGG 60039611 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || ||||||||||| ||||| Sbjct 60039610 CAGAGGGCATGGCATGGAGGCAGTGCCATCAGAGGAAGATC 60039570 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || ||||| || ||| ||| ||||| || ||||| || | || || | Sbjct 60035398 CCACAAATGCGAAAGAGCTGTCTTCCAAGGGAGTGAAAATATGGGATGCCAATGGATCCC 60035457 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||||||||||| | ||||||| | | | || || || |||||||| || || | Sbjct 60035458 GAGACTTTCTGGACAGCCTGGGGTTCTCCGCCAGAGAAGAAGGGGACTTGGGTCCAGTTT 60035517 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || |||||||| || || Sbjct 60035518 ATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATA 60035551 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || || |||||||| || || || Sbjct 60035551 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCT 60035492 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||||||| | |||||||||||||||| || || | || ||||| || ||| Sbjct 60035491 CTGGCGGAGAACCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCATCCCATATTTTC 60035432 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || ||||| || | || |||| Sbjct 60035431 ACTCCCTTGGAAGACAGCTCTTTCGCATTTGTGG 60035398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448251171026880