Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq373 208 6e-49 seq240 190 2e-43 seq331 178 1e-39 seq270 147 2e-30 seq283 113 4e-20 seq380 107 2e-18 >seq373 Length=85787240 Score = 208 bits (230), Expect = 6e-49 Identities = 376/547 (69%), Gaps = 7/547 (1%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || |||||||| || || || || | ||||| Sbjct 5745195 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAATGGGGACCTGCCC 5745254 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||||| || || | |||||||| | |||| || | |||||| | | ||||| Sbjct 5745255 TGGCCGCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACAACCTCTTCAGTA 5745314 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| | ||||| ||||| || ||| | | | Sbjct 5745315 GAAGGTAAACAGAATCTGGTGATTATGGGTAAGAAGACTTGGTTCTCCATTCT--TGAGA 5745372 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || ||||| ||| | |||||||| ||| | || || || || | Sbjct 5745373 AGAATTGACCTTTAAAGGGTAGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTC 5745432 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| |||| | |||| | ||| | || | || ||| | || Sbjct 5745433 CACAAGGAGCTCATTTTCTTGCCAGAAGTCTGGATGATGCCTTAAAACTTACTGAACAAC 5745492 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||| ||||||| || ||||| ||| ||| Sbjct 5745493 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGG 5745552 Query 2495 AGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 | ||| | | || | | | |||||| | |||| ||| ||||| | |||| Sbjct 5745553 AAGCCATGAATCACCCAGGCCATCTTAAACTGTTTGTGACAACGATCATGCAAGACTTTG 5745612 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || |||| || | | ||||||||| || | ||||| |||| || | |||| | Sbjct 5745613 AAAGTGACACCTTTCTTCCAGAAATTGATTTGGAGAAATATAAACTTCTACCAGAATACC 5745672 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 ||||||||| ||||| || |||||||| || || |||| ||||||||||| |||||| Sbjct 5745673 CAGGTGTTCTCTCTGATGTCCAAGAAGAGAAAGGCATTAAGTACAAATTTGAAGTATATG 5745732 Query 2675 aaaaaaa 2681 | || || Sbjct 5745733 AGAAGAA 5745739 >seq240 Length=107702431 Score = 190 bits (210), Expect = 2e-43 Identities = 372/547 (68%), Gaps = 7/547 (1%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 || ||||| || | ||||| || | || |||||||| || || || || | ||||| Sbjct 39599152 CTGAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAACGGGGACCTGCCC 39599093 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||||| || || | |||||||| | |||| || | |||||| | | ||||| Sbjct 39599092 TGGCCGCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACAACCTCTTCAGTA 39599033 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| | ||||| ||||| || |||| | | | Sbjct 39599032 GAAGGTAAACAGAATCTGGTGATTATGGGTAAGAAGACTTGGTTCTCCATTCC--TGAGA 39598975 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || ||||| ||| | |||||||| ||| | || || || || | Sbjct 39598974 AGAATTGACCTTTAAAGGGTAGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTC 39598915 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| |||| | |||| | ||| | || | || ||| | || Sbjct 39598914 CACAAGGAGCTCATTTTCTTGCCAGAAGTCTGGATGATGCCTTAAAACTTACTGAACTAC 39598855 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||| ||||||| || ||||| ||| ||| Sbjct 39598854 CAGAATTAGTAAATAAAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGG 39598795 Query 2495 AGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 | ||| | | || | | | || ||| | |||||||| ||||| | |||| Sbjct 39598794 AAGCCATGAATCACCCAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAAGACTTTG 39598735 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || |||| || | | |||||| || || | ||||| |||| || | |||| | Sbjct 39598734 AAAGTGACACCTTTCTTCCAGAAGTTGATTTGGAGAAATATAAACTTCTACCAGAATACC 39598675 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 |||||||| ||||| || || || || || || |||| ||||||||||| |||||| Sbjct 39598674 TAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATATG 39598615 Query 2675 aaaaaaa 2681 | || || Sbjct 39598614 AGAAGAA 39598608 Score = 149 bits (164), Expect = 5e-31 Identities = 377/563 (67%), Gaps = 33/563 (6%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACA-AGGGAAAACTGCC 2198 |||||||| || ||||| || | || || ||||| | || | ||||| ||||| Sbjct 24312021 CTAAACTGCATCATCGCTGTGTCCCAGAACATTGGCATCAGCAAAACAGGGAC--CTGCC 24311964 Query 2199 ATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCAC 2255 ||||| || || || ||||| || | |||| || | |||||| | | ||||| | Sbjct 24311963 CTGGCCGCCGCTCAAGAATGAGTTCAGGTATTTCCAGAGAATGACCACAACCTCTTCAGC 24311904 Query 2256 TGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCC-ATTA 2314 || || |||||| | || |||||||| || |||| ||||| || ||||| | | Sbjct 24311903 AGAAGGTAATCAGAATCTGGTGATTATGGGTAGGAAGATCTGGTTCTCCCTTCCTGAGAA 24311844 Query 2315 AAAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 ||| || ||||| || |||||||| ||| | |||||||||||| ||| | |||| || | Sbjct 24311843 AAATCAC-CCTTTAAAGAACAGAATTAATTTAGTTCTCAGTAGAGACC-TCAAGAACCTC 24311786 Query 2375 CACGTGGGGCTC-----------ACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAAT 2423 || || ||| ||| |||| | |||| | ||| | || || |||| Sbjct 24311785 CAGAAGGAACTCTTTTTTTTTTTTTTTTTTTGCCAGAAGTCTGGATGATGC-CTTGAAAC 24311727 Query 2424 TATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATC 2483 | || || |||||||||| | | || || | ||||||||| ||||||| | || Sbjct 24311726 T-TAGTA--ACCAGAATTAGCAAATGAAGTAGACATGATTTGGATGGTTGGTGGTGGTTC 24311670 Query 2484 TG-TCTATGAGGAGAGCATTACAAGATCTTGCAAACA----GATGCTGTTTTTAACAAGG 2538 || | ||| |||| ||| | ||| ||| || | || ||| | |||||| Sbjct 24311669 TGTTTTATAAGGAATCCATGA----ATCACCCAAGCAATTTTAAACTATTTGTGACAAGG 24311614 Query 2539 ATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAA 2598 || | || | |||||| |||| |||| || ||||||||| || | ||||| ||| Sbjct 24311613 ATCATTCAGGACTTTGAAAGTGACACATTTTTTCCAGAAATTGATTTGGAGAAATATAAA 24311554 Query 2599 CAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATAC 2658 | || | |||| | ||||||| ||||| || || || || || || |||| ||| Sbjct 24311553 CTTCTGCCAGAATACCGAGGTGTTTTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTAC 24311494 Query 2659 AAATTTGAGATATATGaaaaaaa 2681 |||||||| || |||| || || Sbjct 24311493 AAATTTGAAGTACATGAGAAGAA 24311471 >seq331 Length=101219884 Score = 178 bits (196), Expect = 1e-39 Identities = 186/243 (77%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329 ||| ||| || ||||| | ||||| |||||||| ||| ||||| ||||||||||| Sbjct 68447392 AAATGCC-CAGGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAA 68447334 Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389 |||||| ||| || || | |||| ||||| || | ||||| || || || || || | Sbjct 68447333 ACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGACAAGA 68447274 Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449 | ||||| || |||| ||||| |||||| |||| || ||||||||||| | || ||| Sbjct 68447273 TAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACCCTGG 68447214 Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 | ||||||||||| |||| |||| | || || || ||||| ||||||||||| ||||||| Sbjct 68447213 AGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAA 68447154 Query 1510 TAG 1512 || Sbjct 68447153 CAG 68447151 >seq270 Length=71996105 Score = 147 bits (162), Expect = 2e-30 Identities = 365/547 (67%), Gaps = 9/547 (2%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || ||||||||||| || || || | ||||| Sbjct 40960840 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATTGGCAAGAACGGGGACCTGCCC 40960899 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATG--ACATCTTCTTCCACTG 2257 ||||| || || | |||||||||| |||| || | |||| ||| ||||| | Sbjct 40960900 TGGCCGCCGCTCAGGAATGAATTTAGGTATTTCCAGAGAATGACACAAACTCTTCAGGAG 40960959 Query 2258 ACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAA 2317 | ||||||||| | || | | | | || |||| ||||| || |||| | | || Sbjct 40960960 AAGGCAAACAGAATCTGGT-GTCACGTGTAGGAAGATCTGGTTCTCCATTCC--TGAGAA 40961016 Query 2318 GCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACC 2375 | | | |||| || | ||||| ||| | ||||||| ||| | || || || || || Sbjct 40961017 GAATCGATCTTTAAAGGATAGAATTAATTTAATTCTCAGCAGAGAACTCAAGGAACCTCC 40961076 Query 2376 ACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAA-TTATAATAGGAC 2434 || || ||||| | | |||| | |||| | ||| | ||| ||| ||| | || Sbjct 40961077 ACAAGGAGCTCATTCTCTTGCCAGAAGTCTGGATGA-TATCTAAAAACTTACTGAACAAC 40961135 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||| || |||| || ||||| ||| ||| Sbjct 40961136 CAGAATTAGCAAATAAAGTAGAGATGATTTGGATAGTTAGTGGCAGTTCTGTTTATAAGG 40961195 Query 2495 AGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 | ||| | | || | | | || ||| | |||||||| || | |||| Sbjct 40961196 AATCCATGAATCACCCAGGCCATCTTAAACTATTTGTGACAAGGATCATGTGGGACTTTG 40961255 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || |||| || | || ||||||||| || | ||||| |||| || | |||| | Sbjct 40961256 AAAGTGACACGTTTTTTCCAGAAATTGATTTGGAAAAATATAAACTTCTGCCAGAATACC 40961315 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 |||||||| ||||| ||| || | || || | |||| | ||||||||| |||||| Sbjct 40961316 CAGGTGTTTTCTCTGACGTCCAGCAGGAGAAAGACATTAAGTTCAAATTTGAAGTATATG 40961375 Query 2675 aaaaaaa 2681 | || || Sbjct 40961376 AGAAGAA 40961382 >seq283 Length=72318688 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | || || || ||||||||| Sbjct 16442129 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATCGTGGCCTTCTTTGAG 16442188 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 16442189 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 16442248 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 16442249 ATCGCCCTGTGGATGACTGA 16442268 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || ||||||||| | || ||||| Sbjct 60039742 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 60039683 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || ||||||||| | ||||||||||||| ||||| || ||||| | ||| | Sbjct 60039682 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 60039623 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || ||||||||||| |||| Sbjct 60039622 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 60039582 >seq380 Length=48547382 Score = 107 bits (118), Expect = 2e-18 Identities = 173/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 2433 ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGA 2492 |||||||||| | | | || || | || ||||||| ||||||| || ||||| ||| | Sbjct 33706113 ACCAGAATTAGCAAATAAAGTAGACATGACTTGGATAGTTGGTGGCAGTTCTGTTTATAA 33706054 Query 2493 GGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATT 2552 ||| ||| | | || | | | || ||| | |||||||| ||||| | || Sbjct 33706053 GGAAGCCATGAATCACCCAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAAGACTT 33705994 Query 2553 TGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATT 2612 |||| |||| || | | ||||||||| || | ||||| |||| || | |||| Sbjct 33705993 TGAAAGTGACACCTTTCTTCCAGAAATTGATTTGGAGAAATATAAACTTCTACCAGAATA 33705934 Query 2613 TCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATA 2672 |||||||||| ||||| || || || || || || |||| ||||||||||| |||| Sbjct 33705933 CCCAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATA 33705874 Query 2673 TGaaaaaaa 2681 ||| || || Sbjct 33705873 TGAGAAGAA 33705865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414466676922256