Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq247 116 3e-21 seq98 105 6e-18 seq253 87.8 2e-12 seq223 82.4 7e-11 >seq247 Length=91754291 Score = 116 bits (128), Expect = 3e-21 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| ||||||| || || ||| |||||| || || || || || | Sbjct 30514615 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 30514674 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || ||||||||||| |||||||| |||||||||||||| ||||| Sbjct 30514675 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 30514734 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | ||| ||||| ||||| ||||| || | | || || || | ||| | Sbjct 30514735 G-ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 30514793 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 | || | ||||| |||| ||||| || || || |||||||| ||||| ||| || Sbjct 30514794 CCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGCG 30514849 >seq98 Length=135778131 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39061 CCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGT 39120 |||| | ||| ||||||| || |||||| |||||| || || || || | | || Sbjct 37173962 CCTCGCAGGCGCAACACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGA 37173903 Query 39121 GTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCAC 39179 || || | || || ||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 37173902 GTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG-AT 37173844 Query 39180 GCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTC 39239 | ||| ||||| ||||| ||||| || | | || || || | ||| || || Sbjct 37173843 ACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTC 37173784 Query 39240 CACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 | ||||| |||| |||| || || | |||||||| ||||| ||| || Sbjct 37173783 AAGGGTGATGGTTTTGCCCGGGAGGGTCGTCACAAAGATCTGCATGTTTGCG 37173732 >seq253 Length=75148670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | ||| | ||||| || || || ||| || || || || || || | | Sbjct 15288042 CCACCTCTCAGGCGCAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 15288101 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| ||||| ||||| | ||||||||||| ||| Sbjct 15288102 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCGGGGGGA 15288161 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || || ||| |||||| || | | | | || || || | |||||| Sbjct 15288162 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15288221 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 || | ||||| | || || ||||| || || || ||||| ||||| || || Sbjct 15288222 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGAC 15288274 >seq223 Length=128539186 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | |||| || || ||| |||||| || || || || || | Sbjct 110883099 GCCACCTCACAGGCGCAGCACCGGGTGCAGGGTGGACTCTTTCTGGATGTTCTAGTCTGA 110883158 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || | || | || || ||||||||||||||||||| |||| ||| ||||| | | Sbjct 110883159 GAGACTGCGGCCATCCTCTGGCTGTTTGCCCGCAAATATCAGACACTGGTGGTCAGGCAG 110883218 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || ||| ||||| ||||| ||||| || | || || || | |||||| Sbjct 110883219 GATGCCCTCCTTGTCTTGGATTTCGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCCAC 110883278 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | ||||| | || ||| | || || || |||||||| ||||||| Sbjct 110883279 CTCAAGGGTGATGGTCTTGCCCATGAGAGTGTTCACAAAGATCTGCATCT 110883328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429535108885652