Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq247 143 2e-29 seq98 123 2e-23 seq68 114 9e-21 seq253 109 4e-19 seq223 107 1e-18 seq227 98.7 7e-16 seq423 95.1 8e-15 seq11 82.4 5e-11 >seq247 Length=91754291 Score = 143 bits (158), Expect = 2e-29 Identities = 154/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||||||||| ||||| ||||| ||||| || || || Sbjct 30514845 AACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTCGAGCCC 30514786 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | ||| | |||| || ||||| || ||| | || || || Sbjct 30514785 AGTGACACCATTGAGAATGTCAAAGCCAAAA-TTCAAGACAAGGAGGGTATCCCACCTGA 30514727 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | ||||||||||||||||| |||||||| | |||||| | || || Sbjct 30514726 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTA 30514667 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 30514666 CAACATCCAGAAAGAGTCCAC 30514646 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || |||||||| || ||| | ||| Sbjct 72049579 ATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTTAAGCCCAGT 72049638 Query 23671 GACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||| || | ||| | |||| || ||||| || ||| | || || || || Sbjct 72049639 GACACCAATGAGGATGTCAAAGCCAAAA-TTCAAGACAAGGAGGGTATCCCACCTGACCA 72049697 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | ||| ||||||||||||| ||||| || | || ||| | || ||| | Sbjct 72049698 GCAGCATCTGATACTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTACGA 72049757 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||||||||| Sbjct 72049758 CATCTGGAAAGAGTCCAC 72049775 >seq98 Length=135778131 Score = 123 bits (136), Expect = 2e-23 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || | |||||| |||| ||||| ||||| || || || || || Sbjct 37173736 AACATGCAGATCTTTGTGACGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGCCC 37173795 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | ||| |||||| ||||| || ||| | || || || Sbjct 37173796 AGTGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGAC 37173855 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT---TTAGGCGAT 23784 || |||||| | ||||||||||||||||| |||||||| | |||||| | |||| Sbjct 37173856 CAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGGC--- 37173912 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| || ||||||||||| Sbjct 37173913 TACAACATCCAGAAAGAGTCCAC 37173935 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || ||||| ||||| | ||| || Sbjct 2002565 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGGTGAACCC 2002624 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 2002625 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2002684 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 2002685 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 2002744 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 2002745 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 2002782 >seq68 Length=92142175 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || | ||||| ||||| ||||| || Sbjct 7889634 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGATCATCACCCTCGAGGTTGAACCC 7889693 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 7889694 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 7889753 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 7889754 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTTTCTGACTAC 7889813 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 7889814 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 7889851 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||| | |||||||| | ||| || || ||||| ||||| ||||| || Sbjct 62818792 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACCATCACCCTCGATGTTGAACCC 62818851 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| | || || || ||||| | || || | | Sbjct 62818852 TCAGATACGATAGAAAATGTAAAGGCCGAGATCCAGGATAAGGAAGGAATTCCTCCTGCT 62818911 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || ||||| ||||| |||| |||||| | | | ||||| || ||| Sbjct 62818912 CAGCAAAGAGGGATCTTTGCTGGCAAGCAACGGGAAGATGCATGGACTTTGTCTGACTAC 62818971 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 62818972 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 62819009 >seq253 Length=75148670 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| || || || || ||||| ||||| ||||| || Sbjct 9604449 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 9604508 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | ||| |||| || || | || ||||| | || || | | Sbjct 9604509 TCGGATACGATATAAAATGTAAAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCCGGT 9604568 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | | ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 9604569 CAGCAGAGACTGAACTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTAC 9604624 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||||||||| || | ||||| || || || Sbjct 9604625 AATATTCAAAAAGAGTCTACTCTTCATTTTGTATTGAG 9604662 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| || || || || || Sbjct 15288271 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGCCC 15288212 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || ||||| || || ||||| | || || || Sbjct 15288211 AGTGACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCGAC 15288152 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | |||||| | || ||| Sbjct 15288151 CAGCAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 15288092 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 15288091 AACATCCAGAAGGAGTCGAC 15288072 >seq223 Length=128539186 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || ||| Sbjct 120278156 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGC 120278097 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||| ||||| | || || || || Sbjct 120278096 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCTCCTGACCA 120278038 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || ||||| |||||||| | |||||| | || ||||| Sbjct 120278037 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 120277978 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 120277977 CATCCAGAAAGAGTCCAC 120277960 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || ||| Sbjct 120278384 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 120278325 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | | || || ||||| | || || || || Sbjct 120278324 GACACCATCGAGAATGTCAAGGCAAAGA-TCCAGGATAAGGAAGGCATCCCTCCTGACCA 120278266 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || ||||| || ||||| |||||||| | ||||| | || ||||| Sbjct 120278265 ACAGAGGTTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 120278206 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 120278205 CATCCAGAAAGAGTCCAC 120278188 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || || || || || || ||||| || || ||||| ||| Sbjct 120278613 AATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 120278554 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || ||| || ||||| ||||| | || || || || Sbjct 120278553 TGACACCATCGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 120278494 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || |||||||| | ||||| | || ||||| Sbjct 120278493 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 120278434 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 120278433 CATCCAGAAAGAGTCCAC 120278416 >seq227 Length=108555830 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||| | || || || ||||||||||| || || |||| || || || || ||| Sbjct 57866933 ATGCAGCTCTTTGTGAAGACCCTCACGGGCAAGACCATCATCCTTGAGGTCGAGCCCAGT 57866874 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| ||| | || ||| |||||| ||| |||| ||| | || || || || Sbjct 57866873 TACACCACTGAGAATTTCAAAGCCAAAATTCAAGACGAAGAGGGTATCCCACCTGACCAG 57866814 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | |||||||| ||||| || ||||| || | ||||| | || |||||| Sbjct 57866813 CAGCGTCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 57866754 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||| ||||||| Sbjct 57866753 ATCCAAAAACAGTCCAC 57866737 Score = 98.7 bits (108), Expect = 7e-16 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||| | |||||||| ||||| || || ||||| ||||| | ||| || Sbjct 68205922 AAAATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGCTGAACCC 68205863 Query 23668 ACGGACACTGTTGAAATAT-TAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | ||| || |||| | || | || ||||| | || || || Sbjct 68205862 TCGGATACGATATAAAAATGTAAAGGCCGAGATCCAGAATAAGGAAGGAATTCCTCCTGA 68205803 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || | | || ||||| ||||| ||||||||||| | ||| ||||| || || Sbjct 68205802 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 68205743 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||| || ||||| ||||| || | ||| | || || || Sbjct 68205742 CAATATTCAAAAGGAGTCTACTCTTCATCTCGTGTTGAG 68205704 >seq423 Length=130038232 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||| | |||||||| | || || |||||||| || || ||||| || Sbjct 2009257 AAAATGCAGATTTTCATGAAAACCCTAAGGGAGAAGACGATCACCCTTGAGGTTGAACCC 2009316 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || || || || ||||| | || || ||| Sbjct 2009317 TCAGATACGGCAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2009376 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||| | ||||||||||||| ||| ||||| || | | Sbjct 2009377 CAGCAAAGACTGATCTTTGCTGGCGAGCAACTGGAAGACGGACGTACTTTGTCTGACTGC 2009436 Query 23788 AACATACAAAAAGAG 23802 ||||| ||||| ||| Sbjct 2009437 AACATTCAAAAGGAG 2009451 >seq11 Length=90373283 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/217 (68%), Gaps = 11/217 (5%) Strand=Plus/Minus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 |||||||||||||||| |||||||| || || || || ||||| || || ||||| || Sbjct 26593236 AAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTTGAACCCT 26593177 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 | |||| |||| |||| || || || || ||||| | || || |||| Sbjct 26593176 TGAACACAACAGAAAATGTAAAGGCCAATATCCAGGATAAGGAAGGAATTCCTCCTGATC 26593117 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || ||||| ||||| ||||||||||| | || ||||||| Sbjct 26593116 AGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATG-----TCT------GATTACA 26593068 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||| ||||| ||||| || | ||| | || || || Sbjct 26593067 ACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 26593031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001344538032