Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq423 246 3e-60 seq233 104 2e-17 seq127 95.1 1e-14 seq331 93.3 4e-14 seq113 93.3 4e-14 seq247 89.7 4e-13 seq240 89.7 4e-13 seq98 87.8 2e-12 seq84 82.4 7e-11 >seq423 Length=130038232 Score = 246 bits (272), Expect = 3e-60 Identities = 512/751 (68%), Gaps = 20/751 (3%) Strand=Plus/Plus Query 4389 ACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGC 4448 ||||| || || || || || | || ||| || || ||||| | ||||||| | Sbjct 41477924 ACAAACTCAATGTATTGCTTCCTTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAG 41477983 Query 4449 GCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTA 4508 || | || | || || |||||||| || || | | ||| | ||| ||||| | Sbjct 41477984 GCCTCAGTGAGGAAGTCCTGTTCTATCCGAACAGCATTGATAATTCTTTCTCTTATTCTC 41478043 Query 4509 TCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAA 4568 || | ||||||| | ||| | || |||| | || ||||||||||| || ||| Sbjct 41478044 TCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAATCACAGTGTAAA 41478103 Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 || || |||||||| || ||||| || ||||| || | || ||||| | |||| || Sbjct 41478104 CCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTC 41478163 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || ||||| ||||| | ||||| | ||||||||| |||||||| | || ||||| Sbjct 41478164 TTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCTTCCGCTGCAGCAAAG 41478220 Query 4689 GCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747 |||| | || ||| | | |||| | |||||| |||||| | || ||||| | Sbjct 41478221 ACTACAACACGTTCCCCATAGGTAGCT-GATTTGTCCCCAATCCAGTGCAAGGCCCAATC 41478279 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTTTTTC 4804 || || || || || || || || || | || || || || |||| |||| || Sbjct 41478280 TGCCTTCTTTTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATTCCCTTTCTT- 41478338 Query 4805 AAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTT 4863 |||| |||| || |||||||| | || | ||||||||| |||||||||| |||| Sbjct 41478339 ---TGGGATCTTTTATGTAAGTGTCAGTAAGGAAACTATACATTCCAGAATGTATGTTTT 41478395 Query 4864 CTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAA 4923 | || ||||| || || || | || || | |||||||| || |||||||| | | || Sbjct 41478396 CCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTTGGCTAA 41478455 Query 4924 ATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACAT 4983 ||| || || |||||| | |||||||| || ||||| || ||||| || ||| ||||| Sbjct 41478456 ATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCAGAACAT 41478514 Query 4984 GAGATATAAAGTACTGT-TCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA--TCTTTAG 5040 | |||||||| | || | || || ||||| || || ||||| | |||| || || | Sbjct 41478515 GGGATATAAAAT-CTCTCTCCTCGGGCTTCAGGGATTCCCAGT--GCCAAATGTCCTTGG 41478571 Query 5041 TTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAA 5100 | || || || || ||||| || || |||||||| || || |||| ||| | Sbjct 41478572 ACAGGTCCACCTCCTCGGAGGTCCAGAAGGAAGCTTCCGCCTTCTTACACATCTGCCAGA 41478631 Query 5101 TATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||||| | |||| | || | |||||||| Sbjct 41478632 TATCATGGTACTCGTTGGGGAAGATGACAAA 41478662 Score = 165 bits (182), Expect = 7e-36 Identities = 329/483 (68%), Gaps = 11/483 (2%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| | ||| || ||||| || || |||||||| ||||| || |||| || | Sbjct 119131889 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGG 119131830 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 119131829 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 119131770 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 ||| ||| || |||||| ||| | | || || | | |||||| | Sbjct 119131769 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 119131710 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 ||||| || |||| || || ||||| || || || ||||| | || || || Sbjct 119131709 ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCATTG 119131651 Query 4788 AATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || | ||| |||| || || |||| ||| | ||||| || || || |||| Sbjct 119131650 AAGAGAAATTCCCTTTCTT----TGTTATCTTTAATGT--GTGTCAATAAGGAGACTATT 119131597 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 || ||||||||||| |||||||||||||| || || || || ||||| | |||||| Sbjct 119131596 TATGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGT 119131537 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | |||| ||| | | |||| ||| || | |||||| | |||||| || |||| || Sbjct 119131536 AATCTGAATTTCTTGAACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGC 119131477 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 |||||| || |||| || || |||||||| || ||| |||||||| || || ||| Sbjct 119131476 TGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCA 119131417 Query 5024 GTG 5026 ||| Sbjct 119131416 GTG 119131414 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 ||||| | ||||| || || | ||||| || || || ||| || | |||| | ||| Sbjct 124479725 AAAACGAACATTCAGATAGCTCTTCCTTCTGGATGTTATGGAGGAGTGGCTCT--GGTCT 124479782 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 || |||| | ||||||||||| || | || || ||||| |||||| ||| |||| | Sbjct 124479783 GGCCTGGCTGCAAAACACTTTATAGATATAGGAGCTGGTGTCATAGATGAAGAGTATACA 124479842 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||| ||||| ||| ||| |||||||||| Sbjct 124479843 GGAAATGTTGGCGCTGTCTTGCTTAATTTTGG 124479874 >seq233 Length=98384682 Score = 104 bits (114), Expect = 2e-17 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCA--GGGTGCTACGGACGAATAGCTCCTAGAT 31832 ||||| || ||||| || || | ||||| ||||| || ||| || ||| ||| | | Sbjct 10091082 AAAACAGACATTCAGATAGCTCTTCCTTCTCTGGGTGTTATGGAAGAGTAGTTCCATGGT 10091023 Query 31833 CTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATA 31892 |||| ||||| | ||||||||||| || || || || ||||| |||||| | | |||| Sbjct 10091022 CTGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATGAAAATTATA 10090963 Query 31893 GAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||||| |||| |||| ||||||||||||| Sbjct 10090962 GAGGAAATATTGGTGTTGTACTGTTTAATTTTGG 10090929 >seq127 Length=125710982 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/181 (73%), Gaps = 7/181 (4%) Strand=Plus/Minus Query 31805 GGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCA-GTTAAACACTTTATCGACGT 31863 ||| | || ||| || ||||||| || || ||||| | ||||||||||| || || Sbjct 85916531 GGGCGTTATGGAAGAGTAGCTCCACAGTCAGGCTTGGCTTGCAAAACACTTTATTGATGT 85916472 Query 31864 GGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTT 31923 || || ||||| |||||| ||| ||||||||||| ||||| |||| ||||||| || Sbjct 85916471 AGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAACTT 85916412 Query 31924 TGG---AGAAAAATCATACAGTATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGA 31980 ||| |||||| | | || | |||||||| ||| | | || || || |||||||| Sbjct 85916411 TGGCAAAGAAAAGT-TTGAAG--TCAAAAAGGGTGATCGAATTGCACAGCTCATTTGCGA 85916355 Query 31981 A 31981 | Sbjct 85916354 A 85916354 >seq331 Length=101219884 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/165 (73%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 31771 AGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830 ||| |||| | ||||| || || | ||||| |||| || || || ||||||| | Sbjct 55531264 AGTGAAAATGGGCATTCAGATAGCTCTTCCTTCTGGGTTTTATAGAAGAGTAGCTCCATG 55531205 Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890 ||||| ||||| | |||||||||||||| || || | ||||| ||||| ||| || Sbjct 55531204 GTCTGGCTTGGCTGCAAAACACTTTATCGATGTAGGAACTGGTGTCATAGACGAAGATTA 55531145 Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 ||||||| ||||| ||| ||||||||||||| |||||| Sbjct 55531144 CTGAGGAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAA 55531100 >seq113 Length=139301422 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 97077318 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 97077374 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| || ||||||| || || | ||||| || |||||||| || | |||||| | Sbjct 97077375 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCTTTTG 97077434 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 97077435 ATAAGTCGAC 97077444 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 97058791 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 97058850 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 97058851 ATAAAATCAAAAGGATT 97058867 >seq247 Length=91754291 Score = 89.7 bits (98), Expect = 4e-13 Identities = 174/253 (69%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 34294 AAAGGAAACAGCAAAAAC---ATACAAATGGTTCAGTATATTTATAAAAACACATCTTCT 34350 |||| ||||| || ||| | ||||||||| || |||||||| ||| ||||| || | Sbjct 16952085 AAAGAAAACACAAAGAACGACAAACAAATGGTGCAATATATTTACAAATACACAAGTTAT 16952144 Query 34351 TACGGAGATCCTCTAATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGCT 34410 | | ||| || || |||||||||||||||||| || || ||| |||| || Sbjct 16952145 CCTG---ACCCTATACTGCTGATGAAAAGCGCTAGAAATAGTTGTTGGTCTAAAGATGCA 16952201 Query 34411 GAGTACGGTCTTTACTCAGTATATCAAGGAGGAATACACTATCTaaaaaaaGGAGATAGT 34470 || ||||| || || || | |||||||| |||||| | || || |||| || || Sbjct 16952202 GAATACGGACTCTATTCCATCTATCAAGGGGGAATATTTGAGCTTAAGAAAGATGACAGA 16952261 Query 34471 GTGTTTGTAACAGTTACTAACAAAAACTTTTTAGCGATGGACTACAGAAGTGA-CTATTT 34529 | ||||| | || || || | |||| ||| |||||| | |||| | || ||| Sbjct 16952262 ATTTTTGTTTCTGTAACAAATGAGCACTTGATAGACATGGACCA-TGAAGCCAGCTTTTT 16952320 Query 34530 TGGAGCGTTTTTA 34542 || || |||||| Sbjct 16952321 CGGGGCCTTTTTA 16952333 >seq240 Length=107702431 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4810 GGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAG 4869 || ||| || |||||||| || || || |||||||||||||||||||| ||||| || | Sbjct 97517456 GGACTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGG 97517515 Query 4870 CAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 |||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 97517516 CAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 97517572 >seq98 Length=135778131 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/180 (73%), Gaps = 7/180 (4%) Strand=Plus/Plus Query 31776 AAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTG 31835 |||| || ||| | || || ||||| |||| | ||| || ||||||| | | ||| Sbjct 16576909 AAACAGACATTTAGATAGCTCCTCCTTCCAGGTGTTGTGGAAGAGTAGCTCC-ACA-CTG 16576966 Query 31836 GATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAG 31895 | ||||| | ||||||||||| || || || | ||||| ||||| ||| ||||||| Sbjct 16576967 GCTTGGCTGCAAAACACTTTATAGATGTAGGAGGTGGTGTCATAGAGGAAGATTATAGAG 16577026 Query 31896 GAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAAAAGG 31952 |||| ||||| ||| ||||||||||||| |||||| || | ||| |||||||| Sbjct 16577027 GAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAAGTC-TGAAGT-CAAAAAAGG 16577084 >seq84 Length=50890351 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/161 (71%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 ||||| || ||||| || | | ||||| |||| || ||| || ||||||| | ||| Sbjct 45215752 AAAACGGACATTCAGATAGCACTTCCTTCTGGGTATTATGGAAGAGTAGCTCCACGGTCT 45215811 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 || ||||| | |||||| || | || || || || ||||| | || ||| |||||| Sbjct 45215812 GGCTTGGCTGCAAAACACGTTGTAGATGTAGGAGCTGGTGTCACCAATGAAGATTATAGA 45215871 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 ||||| |||| |||| | || |||||||| |||||| Sbjct 45215872 GGAAATATTGGTGTTGTAGTCTTCAATTTTGGCAAAGAAAA 45215912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039169847332