Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq423 295 9e-75 seq240 111 2e-19 seq1 111 2e-19 seq127 105 9e-18 seq84 98.7 1e-15 seq98 91.5 2e-13 >seq423 Length=130038232 Score = 295 bits (326), Expect = 9e-75 Identities = 632/939 (67%), Gaps = 18/939 (2%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAG---ACATAACTCC 47845 |||| |||| |||||| |||| || | |||| ||| ||| | || ||| ||||| Sbjct 41477735 GTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTCAACACCACTCC 41477794 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 | | ||||| || | || | ||||| || || || || ||| || ||| || Sbjct 41477795 TGTCCTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAAT 41477849 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 ||| |||||||| |||||||| || || | | ||| || |||| || | ||| Sbjct 41477850 ATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAG 41477909 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 || | || |||| || || || || ||| ||| | | |||||||| || || Sbjct 41477910 CAT--GCCTGTCTGTCACAAACTCAATGTATTGCTTCCTTAGAGTGCAATTCATCCCAAT 41477967 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085 || || || || | ||||| || || || || ||||| || ||||||| | || Sbjct 41477968 GAGCTTCACAGGCAAGGCCTCAGTGAGGAAGTCCTGTTCTATCCGAACAGCATTGATAAT 41478027 Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 | | | ||| | ||||| |||| | | || || || ||||| | || || Sbjct 41478028 TCTTTCTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGC 41478087 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||||||||| || | ||| |||||||| || || | ||| || ||||||||||| || || Sbjct 41478088 AAAATCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGG 41478147 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| ||||| ||||| |||||||| ||||| | || ||| | |||||||||| |||| Sbjct 41478148 CATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCC 41478204 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCA 48322 ||| | || ||||| | || | || || || | ||| |||| ||||| Sbjct 41478205 TTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGATTTGTCCCCAATCCA 41478264 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 | |||||||| |||||||| || ||||||||||| ||||| || ||||| ||| | Sbjct 41478265 GTGCAAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATCGTTTCAATGGCATTGAAGCG 41478324 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 ||| | |||| ||| |||||| | |||||| || | | | |||||||||| | || Sbjct 41478325 AAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTAAGGAAACTATACATTCCAGA 41478384 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || || ||||| || || || || || || | ||||| | |||||||| | ||| || Sbjct 41478385 ATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAAC 41478444 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || | |||||| || |||| || |||||||||| |||||||| || ||||| || Sbjct 41478445 TTCTTGGCTAAATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAA 41478503 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 | | ||||| ||||||| | | || | || |||| | ||||| || Sbjct 41478504 AACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAAAT 41478563 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 || || || | || || || || | ||||| || || || || || || ||| |||| Sbjct 41478564 GTCCTTGGACAGGTCCACCTCCTCGGAGGTCCAGAAGGAAGCTTCCGCCTTCTTACACAT 41478623 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 | ||| |||||| ||| | | | ||||| || ||||| Sbjct 41478624 CTGCCAGATATCATGGTACTCGTTGGGGAAGATGACAAA 41478662 Score = 215 bits (238), Expect = 7e-51 Identities = 388/561 (69%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| | ||| || | ||| ||||| || ||||| | ||| || |||||||||| Sbjct 119131889 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGG 119131830 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| ||||| |||| |||||||| ||||| || ||||| ||||||||||| Sbjct 119131829 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 119131770 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC----GTAACTGGCTTCGTTGTG 48316 ||| ||| || ||||| || | || | ||||| ||||| | ||| ||| Sbjct 119131769 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAAC-GTCTTTGTTCCC 119131711 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| | ||||| | ||||||||||| |||| |||||||||||| || ||||| Sbjct 119131710 AATCCAACACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATT 119131652 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 |||||||| | |||| ||| ||||||||| || || || || | ||||||| || Sbjct 119131651 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGACTATTTAT 119131594 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 || || || || ||||| || || || || || || || || || | |||||| || Sbjct 119131593 GTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 119131534 Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 ||| | || | |||| |||| ||| || |||| |||||| ||||||| || || Sbjct 119131533 CTGAATTTCTTGAACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCTGC 119131474 Query 48557 AAAAAATGC--TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 ||| || || |||| | | | ||||||||| |||| | | |||| | |||| Sbjct 119131473 AAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAG 119131416 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | || || || || | | | || | || |||| || || ||||| |||| Sbjct 119131415 TGCCAAATGTCCTTGGACAGGTTCGCCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTC 119131356 Query 48675 TTATACATATTCCATATATCA 48695 |||||| | ||||| |||||| Sbjct 119131355 TTATACGTCTTCCAAATATCA 119131335 >seq240 Length=107702431 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 97514987 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 97515046 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| || |||||||| |||||||| || || ||||| || Sbjct 97515047 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 97515105 >seq1 Length=126035930 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | |||||||| |||||| Sbjct 62631932 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTG 62631991 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| |||| || ||||| || || || || || | ||| | ||||||| Sbjct 62631992 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 62632051 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 62632052 ATATGTTGTGGTCTTTCAGCC 62632072 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 62611282 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 62611341 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| ||||| || ||||| || || | | |||||| Sbjct 62611342 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 62611401 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 62611402 TTTCTTATACCAT 62611414 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| ||||||| || ||||||| || | || Sbjct 62622022 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 62622081 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || || || | || || ||||||| || Sbjct 62622082 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 62622141 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 62622142 TCCAGGTAAATAGC 62622155 >seq127 Length=125710982 Score = 105 bits (116), Expect = 9e-18 Identities = 179/257 (70%), Gaps = 8/257 (3%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | ||||| || |||| | || ||| ||||| Sbjct 85916273 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTCGGTGTCATCCAAAGCTTGAACTTCT 85916330 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || |||||| | || |||| | || || || || |||| ||||||| | || Sbjct 85916331 TCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTTTTTG 85916390 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| || | ||| | || |||| | |||||||||||| Sbjct 85916391 ACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCT 85916450 Query 46054 TCATCTATTACTCCCCCTCCCACATCGATA----CCTTTTAGAGACAGTCCAGATCTAGG 46109 |||||||| || || |||| ||||| ||| ||| || || || || || Sbjct 85916451 TCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAAGCCAAGCCTGACTGTGG 85916510 Query 46110 AGCTATTCTTCCATAAC 46126 ||||| ||||||||||| Sbjct 85916511 AGCTACTCTTCCATAAC 85916527 >seq84 Length=50890351 Score = 98.7 bits (108), Expect = 1e-15 Identities = 242/355 (68%), Gaps = 23/355 (6%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 |||||| || ||||| ||| ||| | | |||| || |||| | || ||| ||||| Sbjct 45216039 TCCAGTAGAACCAAAACCTCCTGAAC--CCCTTTTGGTGTCATCCAAAGCTTGAACTTC- 45215983 Query 45934 TTCAGAT-CAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992 ||| | | | ||||| | || |||| | | || || || || |||| |||||| |||| Sbjct 45215982 TTCTGTTTCTGGATAGAACATCCGTTCACAAATGAGCTGTGCAATTCGATCACCT-TATT 45215924 Query 45993 T-ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAAT 46051 | | |||||| | ||||| ||| ||||| | | || ||||| | |||||||||| Sbjct 45215923 TGACTTCAAACTTTTCTTTGCCAAAATTGAAGACTACAACACCAATATTTCCTCTATAAT 45215864 Query 46052 CTTCATCTATTACTCCCCCTCCCACATCGATACC---TTTTAGAGACAGTCCAGATCTAG 46108 |||||| | || || |||| ||||| | | | |||| || || ||||| | | Sbjct 45215863 CTTCATTGGTGACACCAGCTCCTACATCTACAACGTGTTTTGCAGCCAAGCCAGACCGTG 45215804 Query 46109 GAGCTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATC 46164 |||||| |||||||||| ||||| || | | ||| |||| || ||||| | Sbjct 45215803 GAGCTACTCTTCCATAATACCCAGAA----GGAAGTGCTATCTGAATGTCCGTTTT-CCC 45215749 Query 46165 AATCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATA 46217 || || |||||| ||| || || || || | || |||||||| | ||||| Sbjct 45215748 AAGAGCC-TTCTCCATAGGTGGTATTGTGTAACCATAGGCACTGTACAGGTCATA 45215695 >seq98 Length=135778131 Score = 91.5 bits (100), Expect = 2e-13 Identities = 247/366 (67%), Gaps = 29/366 (8%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATT-GCACTTCC- 45933 ||||||||| || || |||| | ||||||||||| |||||| || || | ||||| Sbjct 16577189 TCCAGTGGAACCCAAACCTTCTGAACCTCTTTCAGTATCATCTAAAGCTTTGAACTTCTA 16577130 Query 45934 -TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992 ||| || | | |||| || ||| | |||| | || | ||| |||||| | || Sbjct 16577129 TTTC---TCGGTA-AATA-ATTTGTTCACAGATGACGTG--CAGTTCAATCACCTTTTTT 16577077 Query 45993 TATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052 | |||| | | ||||| ||| ||| | ||| | | |||| | ||||||||||| Sbjct 16577076 GACTTCAGACTTTTCTTTGCCAAAATTAAACAGTACAGCACCAACATTTCCTCTATAATC 16577017 Query 46053 TTCATCTATTACTCCCCCTCCCACATCGATA---CCTTTTAGAGACAGTCCAGATCTAGG 46109 ||| ||||| || || ||||| ||||| ||| |||| || || |||| | | || Sbjct 16577016 TTCCTCTATGACACCACCTCCTACATCTATAAAGTGTTTTGCAGCCAAGCCAG-TGT-GG 16576959 Query 46110 AGCTATTCTTCCATAACA----GAATTTGGGCATAGACATCCGAATATCTGTTTTAATCA 46165 ||||| ||||||| |||| ||| || || ||| ||| ||||||| | | Sbjct 16576958 AGCTACTCTTCCACAACACCTGGAA----GGAGGAGCTATCTAAATGTCTGTTTGCAAGA 16576903 Query 46166 ATCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGC 46223 | |||||||| ||| || || ||| || || |||||||| | ||||| ||||| Sbjct 16576902 A----CTTTCTCCATAGGTGGTATTATATCATCATAGGCACTGTACAGGTCATAGCCTGC 16576847 Query 46224 TGCATG 46229 || || Sbjct 16576846 AGCCTG 16576841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694651398546560