Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq423 266 5e-66 seq113 111 2e-19 seq240 107 3e-18 seq1 105 1e-17 seq127 89.7 7e-13 seq84 89.7 7e-13 >seq423 Length=130038232 Score = 266 bits (294), Expect = 5e-66 Identities = 629/940 (67%), Gaps = 29/940 (3%) Strand=Plus/Plus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTGTG---ACATAACTCCCATTT 46339 |||| ||||| |||| || | |||| ||| ||| | | ||| ||||| | Sbjct 41477740 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTCAACACCACTCCTGTCC 41477799 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | || || || | ||| | ||||| || || || || ||| || ||| ||||| | Sbjct 41477800 TCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCT 41477854 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 ||||||| ||||| || || || | ||| || |||| || | ||| || Sbjct 41477855 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCAT-- 41477912 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA---CAATTCATTCCTATGA 46516 | || |||| || || || || || || | || || | |||||||| || |||| Sbjct 41477913 GCCTGTCTGTCACAAACTCAATGTA---TTGCTTCCTTAGAGTGCAATTCATCCCAATGA 41477969 Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATA-TT 46575 | || || || | ||||| || || || || ||||| || ||||||| |||| || Sbjct 41477970 GCTTCACAGGCAAGGCCTCAGTGAGGAAGTCCTGTTCTATCCGAACAGCATT-GATAATT 41478028 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 | | ||| | | ||||| |||| || | || || || ||||| | || ||| Sbjct 41478029 CTTTCTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCA 41478088 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 |||||||| || | || |||||||| || || | ||| || ||||||||||| |||||| Sbjct 41478089 AAATCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGC 41478148 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 || ||||| || || |||||||| ||||| | || ||| | ||||||||| |||||| Sbjct 41478149 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCT 41478205 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG-----AATCC 46810 || | || || || | |||| | || || || | || | ||| || ||||| Sbjct 41478206 TCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGC-TGATT-TGTCCCCAATCC 41478263 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 | |||||||| ||||| || || ||||||||||| ||||| || ||||| ||| Sbjct 41478264 AGTGCAAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATCGTTTCAATGGCATTGAAGC 41478323 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930 |||| | |||| | |||||| | || || || | | | |||||||||| | | Sbjct 41478324 GAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTAAGGAAACTATACATTCCAG 41478383 Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990 |||| |||||||| || || || || || || | ||||| | ||||| || | ||| | Sbjct 41478384 AATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAA 41478443 Query 46991 CCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAA 47050 | ||| | |||||| || ||| || |||| ||||| |||||||| || ||||| | Sbjct 41478444 CTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGA 41478502 Query 47051 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGA 47110 | ||| ||||| ||||||| | | || |||| |||| | ||||| | Sbjct 41478503 AAACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAAA 41478562 Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170 | || || || | || || || || | |||||||| || || || || || ||| ||| Sbjct 41478563 TGTCCTTGGACAGGTCCACCTCCTCGGAGGTCCAGAAGGAAGCTTCCGCCTTCTTACACA 41478622 Query 47171 TATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 | | ||| |||||| | || | | | || || || ||||| Sbjct 41478623 TCTGCCAGATATCATGGTACTCGTTGGGGAAGATGACAAA 41478662 Score = 212 bits (234), Expect = 9e-50 Identities = 389/564 (69%), Gaps = 12/564 (2%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| | ||| || | || ||||| || ||||| | ||| || |||||||||| Sbjct 119131889 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGG 119131830 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| ||||| | || |||||||| ||||| || ||||| ||||||||||| Sbjct 119131829 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 119131770 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC----GTAACTGGCATCATTATG 46805 ||| ||| || || || || ||| | ||||| ||||| | | | || Sbjct 119131769 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAAC-GTCTTTGTTCCC 119131711 Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 |||||| | ||||| | ||||| ||||| ||||| ||||||||||| || ||||| Sbjct 119131710 AATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCATT 119131652 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 |||||||| | |||| | |||||||| || ||| || || | ||||||| || Sbjct 119131651 GAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTAT 119131594 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 || ||||| |||||||| ||||| || || || || || || || | ||| ||||| Sbjct 119131593 GTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 119131534 Query 46986 CTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 ||| | ||| | |||| |||| || || |||| ||||| ||||||| || || Sbjct 119131533 CTGAATTTCTTGAACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCTGC 119131474 Query 47046 AAAAAATGCC--AATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAG 47103 ||| || ||| |||| | | | ||||||||| |||| || | |||| | |||| Sbjct 119131473 AAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAG 119131416 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 | || || || || | | | || | || ||||||| || ||||| |||| Sbjct 119131415 TGCCAAATGTCCTTGGACAGGTTCGCCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTC 119131356 Query 47164 TTATACATATTCCATATATCACGA 47187 |||||| | ||||| |||||| || Sbjct 119131355 TTATACGTCTTCCAAATATCATGA 119131332 >seq113 Length=139301422 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | ||| | Sbjct 97069729 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 97069788 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 97069789 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 97069848 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 97069849 CCACCACTCTTTCCCC 97069864 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| | Sbjct 97083628 TACCTCTTCCGCTGTCCAGAAGGAAGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 97083687 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 || ||||| ||||| || ||||| Sbjct 97083688 GTACTGGATTGGAAAGATGACAAA 97083711 >seq240 Length=107702431 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || ||||||||||| |||||||| ||||| || || ||| Sbjct 97514987 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 97515046 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| || |||||||| |||||||| || || || || || Sbjct 97515047 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 97515106 Query 46774 AC 46775 || Sbjct 97515107 AC 97515108 >seq1 Length=126035930 Score = 105 bits (116), Expect = 1e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 62611282 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 62611341 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| || |||||||| ||||| || ||||| || || | | |||||| Sbjct 62611342 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 62611401 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 62611402 TTTCTTATACCAT 62611414 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||||| || || || || || || || || || || Sbjct 62638623 CTGAACACTTTCTTTGTTTCTTTGTGTAAGTTAGAGACAGCAATCCTGGCTGCCAGGATA 62638682 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| | Sbjct 62638683 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 62638742 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || || | || | ||||| || |||||||||| Sbjct 62638743 TCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 62638788 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| |||||||| ||||| | |||||||| |||||| Sbjct 62631932 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTG 62631991 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| |||| || || || || || || || |||| || | ||||||| Sbjct 62631992 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 62632051 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| || |||| ||| Sbjct 62632052 ATATGTTGTGGTCTTTC 62632068 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| ||| Sbjct 62621572 TCAAATTCTTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 62621631 Query 76580 CACTC 76584 || || Sbjct 62621632 CAGTC 62621636 >seq127 Length=125710982 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 44363 TCCCGTTGATCCAAATCCT--TGAGCGTCTCTATTGGTACTATCTAGAGATTGTACTTCC 44420 ||| || || ||||| ||| ||| | | || | ||| ||| | || ||| ||||| Sbjct 85916273 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTCGGTGTCATCCAAAGCTTGAACTTCT 85916330 Query 44421 TCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATTT 44480 |||| || |||||| | || |||| | || || || || |||| |||||| | || Sbjct 85916331 TCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTTTTTG 85916390 Query 44481 ATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATCT 44540 | || ||| | ||||| ||| || | || | || |||| || || ||||||||| Sbjct 85916391 ACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCT 85916450 Query 44541 TCATCTATTACTCCACCTCCCACATCAATA 44570 |||||||| || ||| |||| ||||||||| Sbjct 85916451 TCATCTATGACACCAGCTCCTACATCAATA 85916480 >seq84 Length=50890351 Score = 89.7 bits (98), Expect = 7e-13 Identities = 238/354 (67%), Gaps = 21/354 (6%) Strand=Plus/Minus Query 44363 TCCCGTTGATCCAAATCCT--TGAGCGTCTCTATTGGTACTATCTAGAGATTGTACTTCC 44420 ||| || || ||||| ||| ||| | | || ||||| ||| | || ||| ||||| Sbjct 45216039 TCCAGTAGAACCAAAACCTCCTGAAC--CCCTTTTGGTGTCATCCAAAGCTTGAACTTCT 45215982 Query 44421 TCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATTT 44480 ||| || ||||| | || |||| | | || || || || |||| ||||||| ||||| Sbjct 45215981 TCTGTTTCTGGATAGAACATCCGTTCACAAATGAGCTGTGCAATTCGATCACCT-TATTT 45215923 Query 44481 -ATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATC 44539 | || ||| | ||||| ||| ||||| | | || ||||| || || |||||||| Sbjct 45215922 GACTTCAAACTTTTCTTTGCCAAAATTGAAGACTACAACACCAATATTTCCTCTATAATC 45215863 Query 44540 TTCATCTATTACTCCACCTCCCACATCAATACC---TTTTAGAGAAAGACCCGATCTAGG 44596 ||||| | || ||| |||| ||||| | | | |||| || | || || | || Sbjct 45215862 TTCATTGGTGACACCAGCTCCTACATCTACAACGTGTTTTGCAGCCAAGCCAGACCGTGG 45215803 Query 44597 CGCTATTCTTCCATAA----CAGAATTTTGGCATAGACATACGAATATCTGTTTTAATCA 44652 |||| |||||||||| ||||| || | | || |||| || ||||| || Sbjct 45215802 AGCTACTCTTCCATAATACCCAGAA----GGAAGTGCTATCTGAATGTCCGTTTT-CCCA 45215748 Query 44653 ACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTATAAATCATA 44704 | | | |||||| ||| || || || ||| | || |||||||| | ||||| Sbjct 45215747 AGAG-CCTTCTCCATAGGTGGTATTGTGTAACCATAGGCACTGTACAGGTCATA 45215695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712916540993280