Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq3971 241 1e-58
seq5093 127 2e-24
seq7904 102 8e-17
>seq3971
Length=4903791
Score = 241 bits (266), Expect = 1e-58
Identities = 413/596 (69%), Gaps = 9/596 (2%)
Strand=Plus/Plus
Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005
|| ||||| |||||||| || || ||||| || ||||| ||||| |||||||| ||||||
Sbjct 744626 AGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGT 744685
Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065
|| || |||||||| | || |||||| |||||||||||| | ||| ||||||| ||
Sbjct 744686 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 744745
Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125
|| | ||||||||| || || || | | ||||| | | | ||||| | ||
Sbjct 744746 AAATAACCAGAAAAG---ATGCCTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAG 744802
Query 17126 GTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCC 17185
|| || ||||||| | |||||| | | |||| || || || | ||| | ||| |
Sbjct 744803 GTAGCTTCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGC 744862
Query 17186 ATCGTTTCTATGGCCTTAA--ATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTA 17242
|||||||| ||||| || | | || ||| |||| || | || || |||| || ||
Sbjct 744863 ATCGTTTCAATGGCATTGAGGAGAAATTCCCTTT---CTTTGGGATCTTTTATGTAAGTG 744919
Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302
|| || | | || |||||||| || |||||||| || ||||| || || || || |
Sbjct 744920 TCAATACGGAAACTATACATTTCAGAATGTATGTTTTCTATGGCAATTTGGAAGCCACAG 744979
Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362
|| || |||||||| | || |||||||| | ||||| ||| | | ||||| ||
Sbjct 744980 AAACAGCGGGCTTCTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTT 745039
Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC 17422
|| ||||| || || || || || || ||| ||||| || |||| | | || ||
Sbjct 745040 ACTATGCCATCACTTGCTGCAAAGAAAACCAGAATATGAGATATAAAATCTCTCTCCTCG 745099
Query 17423 GGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAA 17482
|| | || ||||| | | || ||||| | ||||| || |||| ||||||
Sbjct 745100 GGCTTCAGGGATTCCCAGTGCCAAACGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAG 745159
Query 17483 AAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538
|| ||| | ||||| |||||||| | ||| ||||||| ||| | ||||||||
Sbjct 745160 AAGGAAGCTTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAA 745215
>seq5093
Length=2087638
Score = 127 bits (140), Expect = 2e-24
Identities = 375/570 (66%), Gaps = 20/570 (4%)
Strand=Plus/Plus
Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018
|||| || || || | || ||||| ||||| || ||||| |||||||| || |||||||
Sbjct 528957 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 529016
Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078
| | || |||||| |||||||||||| | ||| ||||| || || || |||||||
Sbjct 529017 TGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAA 529076
Query 17079 AGAATATAC--CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTT 17136
|| | | | ||| | | |||||||| | ||||| | | || |||||||
Sbjct 529077 AGCAGGTGCTTTCTCTAGG---GCAAACGCTGCAACACGTTCTCCATGAGTAACGTCTTT 529133
Query 17137 GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196
||| | |||||| | | ||||| | || || | ||| | | | ||| ||||| ||
Sbjct 529134 GTTCCCAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAAT 529192
Query 17197 GGCCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254
||| || | | || || |||| | || || || || || || || || ||
Sbjct 529193 GGCATTGAAGAGAAACTCCCTTTGT----TA--TC--TTTAATGTGTGTCAATAAGGAGA 529244
Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314
|| | || || | |||||||| || || || || || || || || ||||| || |
Sbjct 529245 CTATTTATGTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTT 529304
Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374
|| | || |||| ||| ||| ||||| | | ||||| | || || || ||
Sbjct 529305 TCTGTAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCA 529364
Query 17375 CTCGCGGCGAAAAACGCC--AATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432
| || || || || ||| |||| | | | || |||||| |||| || || | ||
Sbjct 529365 CATGCTGCAAAGAAAGCCAGAATACAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGG 529422
Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492
| ||||| | | || ||||| | |||||||| | || |||| ||| | ||
Sbjct 529423 CTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCT 529482
Query 17493 CTGCCTTTTTATACATATTCCAAATATCAT 17522
|| | || |||||| | |||||||||||||
Sbjct 529483 CTACTTTCTTATACGTTTTCCAAATATCAT 529512
>seq7904
Length=13651311
Score = 102 bits (112), Expect = 8e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| ||||||||||||||||| || |||||||| | || |||||| |||||||||||
Sbjct 3487596 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3487655
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||||| || || || || |||||||| || || || || | ||||| |
Sbjct 3487656 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 3487715
Query 17106 C 17106
|
Sbjct 3487716 C 3487716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517460696644320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |