Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3971 241 1e-58 seq5093 127 2e-24 seq7904 102 8e-17 >seq3971 Length=4903791 Score = 241 bits (266), Expect = 1e-58 Identities = 413/596 (69%), Gaps = 9/596 (2%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || ||||| |||||||| || || ||||| || ||||| ||||| |||||||| |||||| Sbjct 744626 AGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGT 744685 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 || || |||||||| | || |||||| |||||||||||| | ||| ||||||| || Sbjct 744686 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 744745 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 || | ||||||||| || || || | | ||||| | | | ||||| | || Sbjct 744746 AAATAACCAGAAAAG---ATGCCTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAG 744802 Query 17126 GTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCC 17185 || || ||||||| | |||||| | | |||| || || || | ||| | ||| | Sbjct 744803 GTAGCTTCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGC 744862 Query 17186 ATCGTTTCTATGGCCTTAA--ATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTA 17242 |||||||| ||||| || | | || ||| |||| || | || || |||| || || Sbjct 744863 ATCGTTTCAATGGCATTGAGGAGAAATTCCCTTT---CTTTGGGATCTTTTATGTAAGTG 744919 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 || || | | || |||||||| || |||||||| || ||||| || || || || | Sbjct 744920 TCAATACGGAAACTATACATTTCAGAATGTATGTTTTCTATGGCAATTTGGAAGCCACAG 744979 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362 || || |||||||| | || |||||||| | ||||| ||| | | ||||| || Sbjct 744980 AAACAGCGGGCTTCTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTT 745039 Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC 17422 || ||||| || || || || || || ||| ||||| || |||| | | || || Sbjct 745040 ACTATGCCATCACTTGCTGCAAAGAAAACCAGAATATGAGATATAAAATCTCTCTCCTCG 745099 Query 17423 GGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAA 17482 || | || ||||| | | || ||||| | ||||| || |||| |||||| Sbjct 745100 GGCTTCAGGGATTCCCAGTGCCAAACGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAG 745159 Query 17483 AAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || ||| | ||||| |||||||| | ||| ||||||| ||| | |||||||| Sbjct 745160 AAGGAAGCTTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAA 745215 >seq5093 Length=2087638 Score = 127 bits (140), Expect = 2e-24 Identities = 375/570 (66%), Gaps = 20/570 (4%) Strand=Plus/Plus Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || || | || ||||| ||||| || ||||| |||||||| || ||||||| Sbjct 528957 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 529016 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||||||||||| | ||| ||||| || || || ||||||| Sbjct 529017 TGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAA 529076 Query 17079 AGAATATAC--CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTT 17136 || | | | ||| | | |||||||| | ||||| | | || ||||||| Sbjct 529077 AGCAGGTGCTTTCTCTAGG---GCAAACGCTGCAACACGTTCTCCATGAGTAACGTCTTT 529133 Query 17137 GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196 ||| | |||||| | | ||||| | || || | ||| | | | ||| ||||| || Sbjct 529134 GTTCCCAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAAT 529192 Query 17197 GGCCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||| || | | || || |||| | || || || || || || || || || Sbjct 529193 GGCATTGAAGAGAAACTCCCTTTGT----TA--TC--TTTAATGTGTGTCAATAAGGAGA 529244 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 || | || || | |||||||| || || || || || || || || ||||| || | Sbjct 529245 CTATTTATGTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTT 529304 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | || |||| ||| ||| ||||| | | ||||| | || || || || Sbjct 529305 TCTGTAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCA 529364 Query 17375 CTCGCGGCGAAAAACGCC--AATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 | || || || || ||| |||| | | | || |||||| |||| || || | || Sbjct 529365 CATGCTGCAAAGAAAGCCAGAATACAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGG 529422 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 | ||||| | | || ||||| | |||||||| | || |||| ||| | || Sbjct 529423 CTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCT 529482 Query 17493 CTGCCTTTTTATACATATTCCAAATATCAT 17522 || | || |||||| | ||||||||||||| Sbjct 529483 CTACTTTCTTATACGTTTTCCAAATATCAT 529512 >seq7904 Length=13651311 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||||||||| || |||||||| | || |||||| ||||||||||| Sbjct 3487596 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3487655 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || || | ||||| | Sbjct 3487656 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 3487715 Query 17106 C 17106 | Sbjct 3487716 C 3487716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517460696644320