Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq3971 257 2e-63
seq5093 134 1e-26
seq2336 107 2e-18
seq7904 102 8e-17
>seq3971
Length=4903791
Score = 257 bits (284), Expect = 2e-63
Identities = 601/891 (67%), Gaps = 28/891 (3%)
Strand=Plus/Plus
Query 15902 ACACCCATTCTTTGGTAATCAC--TAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTA 15959
|| ||||| || || || || | | || | || || |||||||| || |||| |
Sbjct 744349 ACTCCCATCCTCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT--- 744405
Query 15960 AAGATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCC 16017
|| ||||| |||||||| ||||| || || || ||||||| ||| | ||
Sbjct 744406 --GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAAC--CTTGCTAAAACC 744461
Query 16018 CAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAAT 16076
||||||| | | ||| ||||| ||||| || || |||| ||||| ||| |||||
Sbjct 744462 CAGTTCC--AGCATGTCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGT-GCAAT 744518
Query 16077 TAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCG 16136
| || || ||| | || || | || | || | |||| ||||||||| ||| |
Sbjct 744519 TCATCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAG 744578
Query 16137 CTTCTTTAATGATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAAC 16195
| | |||| || || | ||| | | ||| ||| | || |||||||| |||
Sbjct 744579 CATTGATAATTATTTCTCTTACTCTCTCCTCCAGT-GGTTTGTGTACCAGGTGTTTGAAC 744637
Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255
|| || || || || || || |||| || || |||||||| |||||||| ||||||||
Sbjct 744638 ATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAT 744697
Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315
|| | || ||||| |||||||||||| | ||||||||||| ||||| | || |||
Sbjct 744698 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAA 744757
Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375
||| || || || | | ||||| | | | ||||| | || ||||| |||||
Sbjct 744758 AAG---ATGCCTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTG 744814
Query 16376 TTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435
| | |||||| | | |||| || || || | || | |||| ||||||||| |||
Sbjct 744815 TCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATG 744874
Query 16436 GCCTTAA--ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAAC 16493
|| || | | || ||| | |||| | ||| |||| || || ||||| | ||||
Sbjct 744875 GCATTGAGGAGAAATTCCC--TTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAAC 744932
Query 16494 TGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCT 16553
| |||||||| || |||||||| |||||||| || || || ||| |||| || || || |
Sbjct 744933 TATACATTTCAGAATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTT 744992
Query 16554 CCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613
| | || || ||||| | |||||| ||| ||| ||| ||||| || || || ||||
Sbjct 744993 CTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 745052
Query 16614 TTGCAGCAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAAT 16671
|||| |||| ||||| |||||| | | || |||| | | || || | | ||
Sbjct 745053 TTGCTGCAAAGAAAACCAGAATATGAGAT--ATAAAATCTCTCTCCTCGGGCTTCAGGGA 745110
Query 16672 ATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCAC 16731
| ||| | | || ||||| | ||||| || || | ||||| ||| ||| |
Sbjct 745111 TTCCCAGTGCCAAACGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTC 745170
Query 16732 TGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782
||||| |||||||| | ||| ||||||| ||| | ||||| || | |||
Sbjct 745171 CGCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAAGATGAC 745221
>seq5093
Length=2087638
Score = 134 bits (148), Expect = 1e-26
Identities = 373/566 (66%), Gaps = 16/566 (3%)
Strand=Plus/Plus
Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258
|| || || |||| || |||| || || || ||||| |||||||| |||||||| ||
Sbjct 528959 AGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTG 529018
Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318
| || ||||| |||||||||||| | |||| ||||| ||||| || || ||||||
Sbjct 529019 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAG 529078
Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378
| | | || || ||||| || | ||||| | | ||| | ||||| ||
Sbjct 529079 CAGGTGCTTTCTCTAG-GGCAAACGCTGCAACACGTTCTCCATGAGTAACGTCTTTGTTC 529137
Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438
| |||||| | | ||||| | || || | || | || | ||| ||||| |||||
Sbjct 529138 CCAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCA 529196
Query 16439 TT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496
|| | | || || |||| | |||| || || || ||||| || | ||| |
Sbjct 529197 TTGAAGAGAAACTCCCTTTGT------TATC--TTTAATGTGTGTCAATAAGGAGACTAT 529248
Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556
|| || | |||||||| ||||| || || || || ||||||||||| | || |
Sbjct 529249 TTATGTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 529308
Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616
|| || | ||| |||| ||||| ||| ||| |||| || || || |||| ||
Sbjct 529309 TAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATG 529368
Query 16617 CAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674
| ||||| || ||| |||| | | || |||||| |||| |||| | || |
Sbjct 529369 CTGCAAAGAAAGCCAGAATACAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTC 529426
Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734
||| | | || ||||| | |||||||| | | | |||| || | || || |
Sbjct 529427 CCAGTGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTAC 529486
Query 16735 CTTTTTATACATTTTCCAAATATCAT 16760
|| |||||| |||||||||||||||
Sbjct 529487 TTTCTTATACGTTTTCCAAATATCAT 529512
>seq2336
Length=9258750
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| ||||| ||||||||||| | |||||||| |||| ||||
Sbjct 5792329 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 5792270
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| |
Sbjct 5792269 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 5792210
Query 16344 CGATTAATCGTTCC 16357
| | | || ||||
Sbjct 5792209 CCACCACTCTTTCC 5792196
>seq7904
Length=13651311
Score = 102 bits (112), Expect = 8e-17
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| ||||||||||||||||| |||||||| || | || ||||| ||||||||||||
Sbjct 3487598 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3487657
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||||| ||||| || || |||||||| || || || || | ||||| ||
Sbjct 3487658 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 3487716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511330502467680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |