Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3971 257 2e-63 seq5093 134 1e-26 seq2336 107 2e-18 seq7904 102 8e-17 >seq3971 Length=4903791 Score = 257 bits (284), Expect = 2e-63 Identities = 601/891 (67%), Gaps = 28/891 (3%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCAC--TAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTA 15959 || ||||| || || || || | | || | || || |||||||| || |||| | Sbjct 744349 ACTCCCATCCTCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT--- 744405 Query 15960 AAGATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCC 16017 || ||||| |||||||| ||||| || || || ||||||| ||| | || Sbjct 744406 --GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAAC--CTTGCTAAAACC 744461 Query 16018 CAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAAT 16076 ||||||| | | ||| ||||| ||||| || || |||| ||||| ||| ||||| Sbjct 744462 CAGTTCC--AGCATGTCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGT-GCAAT 744518 Query 16077 TAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCG 16136 | || || ||| | || || | || | || | |||| ||||||||| ||| | Sbjct 744519 TCATCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAG 744578 Query 16137 CTTCTTTAATGATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAAC 16195 | | |||| || || | ||| | | ||| ||| | || |||||||| ||| Sbjct 744579 CATTGATAATTATTTCTCTTACTCTCTCCTCCAGT-GGTTTGTGTACCAGGTGTTTGAAC 744637 Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 || || || || || || || |||| || || |||||||| |||||||| |||||||| Sbjct 744638 ATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAT 744697 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315 || | || ||||| |||||||||||| | ||||||||||| ||||| | || ||| Sbjct 744698 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAA 744757 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 ||| || || || | | ||||| | | | ||||| | || ||||| ||||| Sbjct 744758 AAG---ATGCCTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTG 744814 Query 16376 TTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 | | |||||| | | |||| || || || | || | |||| ||||||||| ||| Sbjct 744815 TCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATG 744874 Query 16436 GCCTTAA--ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAAC 16493 || || | | || ||| | |||| | ||| |||| || || ||||| | |||| Sbjct 744875 GCATTGAGGAGAAATTCCC--TTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAAC 744932 Query 16494 TGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCT 16553 | |||||||| || |||||||| |||||||| || || || ||| |||| || || || | Sbjct 744933 TATACATTTCAGAATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTT 744992 Query 16554 CCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | | || || ||||| | |||||| ||| ||| ||| ||||| || || || |||| Sbjct 744993 CTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 745052 Query 16614 TTGCAGCAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAAT 16671 |||| |||| ||||| |||||| | | || |||| | | || || | | || Sbjct 745053 TTGCTGCAAAGAAAACCAGAATATGAGAT--ATAAAATCTCTCTCCTCGGGCTTCAGGGA 745110 Query 16672 ATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCAC 16731 | ||| | | || ||||| | ||||| || || | ||||| ||| ||| | Sbjct 745111 TTCCCAGTGCCAAACGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTC 745170 Query 16732 TGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 ||||| |||||||| | ||| ||||||| ||| | ||||| || | ||| Sbjct 745171 CGCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAAGATGAC 745221 >seq5093 Length=2087638 Score = 134 bits (148), Expect = 1e-26 Identities = 373/566 (66%), Gaps = 16/566 (3%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||| || |||| || || || ||||| |||||||| |||||||| || Sbjct 528959 AGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTG 529018 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||||||||||| | |||| ||||| ||||| || || |||||| Sbjct 529019 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAG 529078 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 | | | || || ||||| || | ||||| | | ||| | ||||| || Sbjct 529079 CAGGTGCTTTCTCTAG-GGCAAACGCTGCAACACGTTCTCCATGAGTAACGTCTTTGTTC 529137 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | |||||| | | ||||| | || || | || | || | ||| ||||| ||||| Sbjct 529138 CCAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCA 529196 Query 16439 TT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 || | | || || |||| | |||| || || || ||||| || | ||| | Sbjct 529197 TTGAAGAGAAACTCCCTTTGT------TATC--TTTAATGTGTGTCAATAAGGAGACTAT 529248 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 || || | |||||||| ||||| || || || || ||||||||||| | || | Sbjct 529249 TTATGTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 529308 Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 || || | ||| |||| ||||| ||| ||| |||| || || || |||| || Sbjct 529309 TAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATG 529368 Query 16617 CAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 | ||||| || ||| |||| | | || |||||| |||| |||| | || | Sbjct 529369 CTGCAAAGAAAGCCAGAATACAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTC 529426 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| | | || ||||| | |||||||| | | | |||| || | || || | Sbjct 529427 CCAGTGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTAC 529486 Query 16735 CTTTTTATACATTTTCCAAATATCAT 16760 || |||||| ||||||||||||||| Sbjct 529487 TTTCTTATACGTTTTCCAAATATCAT 529512 >seq2336 Length=9258750 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| |||| Sbjct 5792329 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 5792270 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| | Sbjct 5792269 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 5792210 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 5792209 CCACCACTCTTTCC 5792196 >seq7904 Length=13651311 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||||||||| |||||||| || | || ||||| |||||||||||| Sbjct 3487598 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3487657 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 3487658 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 3487716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511330502467680