Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq6472 154 1e-32 seq7015 98.7 8e-16 >seq6472 Length=2227648 Score = 154 bits (170), Expect = 1e-32 Identities = 234/331 (71%), Gaps = 4/331 (1%) Strand=Plus/Plus Query 19017 AACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCG 19076 ||| |||| | |||||||| | |||||||||||||| || |||||||| || || || Sbjct 2219801 AACAGTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGCGTGCCT 2219860 Query 19077 TTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAA 19136 |||||||| || | || || || || || ||||| | ||||| | || || || || Sbjct 2219861 TTCAACATCGCCAGCTACGCCCTGCTCACGTACATGATTGCGCACATCACGGGCCTGAAG 2219920 Query 19137 ACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCT 19196 | || || || | || || |||| ||||||||||||||| ||||||| || || | Sbjct 2219921 CCAGGTGACTTTGTACACACTTTGGGAGATGCACATATTTACCTGAATCACATCGAGCCA 2219980 Query 19197 TTAAAAGTGCAGCT--AGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAA 19254 | ||| | ||||| ||| || ||| | |||||| || || || ||| |||||| Sbjct 2219981 CTGAAAATTCAGCTTCAGCGAGAACCC--AGACCTTTCCCAAAGCTCAAGATTCTTCGAA 2220038 Query 19255 ATGTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCAC 19314 | || | || | ||||| ||| || || |||||| |||| || || ||||| | Sbjct 2220039 AAGTTGAGAAAATTGATGACTTCAAAGCTGAAGACTTTCAGATTGAAGGGTACAATCCGC 2220098 Query 19315 AccccccccTAAAAATGGAAATGGCTCTTTA 19345 | || | | ||||||||||||||| |||| Sbjct 2220099 ATCCAACTATTAAAATGGAAATGGCTGTTTA 2220129 >seq7015 Length=9623085 Score = 98.7 bits (108), Expect = 8e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| |||||||| ||| | | || ||||| || || | ||| |||| | ||| Sbjct 2250319 ATGGCACTGCCTCCATGCCACGCCCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGTCC 2250378 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||||||||||| || |||||||| || || || |||||||| || | Sbjct 2250379 TGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGCGTGCCTTTCAACATCGCCAGC 2250438 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCA 19120 || || || || || ||||| | ||||| Sbjct 2250439 TACGCCCTACTCACGTACATGATTGCGCA 2250467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399440099834580