Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq5838 253 2e-62 seq6472 179 4e-40 seq3 174 2e-38 seq7015 159 4e-34 >seq5838 Length=3156588 Score = 253 bits (280), Expect = 2e-62 Identities = 607/910 (67%), Gaps = 11/910 (1%) Strand=Plus/Plus Query 9459 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATA 9517 ||| ||| | || ||| | |||||| || ||||| | || |||| | |||||||| Sbjct 2731418 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAACG 2731476 Query 9518 TCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTAC 9577 | | |||||||| || |||||| ||||| || | || || | || ||||| | | Sbjct 2731477 TGGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACC 2731536 Query 9578 TGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACT 9637 || | ||| |||| || || ||| |||| || || || || | || || ||||| |||| Sbjct 2731537 TGCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 2731596 Query 9638 ATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTG 9697 || | | | | ||| | ||| || || | | ||||||| || ||| ||| Sbjct 2731597 ATGTCAG---GGAGCATAACTGGGTCTTCGGCCATGACATGTGTAAGCTCCTCTCGGGGT 2731653 Query 9698 TGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGT 9757 | | ||||| |||||||| || |||||| ||| ||||| || || | ||||||| Sbjct 2731654 TTTATTACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGT 2731713 Query 9758 ATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCAT 9815 | || || ||||| ||||||| ||| || ||| | || || |||| ||| || Sbjct 2731714 ACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACCTTTGGTAT 2731771 Query 9816 AGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 9875 | ||| | | |||||| ||||||| | | | || ||||||||| | || Sbjct 2731772 CATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATTTT 2731831 Query 9876 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 9934 ||||| |||| | | | ||||| || || | || |||||| || Sbjct 2731832 CCATGGGACTGAAGA-GTTATTTCCAGGGTCTCTTTGCAGTGCTATTTACCCACAGGATA 2731890 Query 9935 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 9994 | | || ||||||| |||| | || ||| | || ||||| | | | Sbjct 2731891 CAGTAGATAGCTGGAGGCATTTCCACACTCTGAAAATGACCGTCTTGTGTCTCGCTCTCC 2731950 Query 9995 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 10054 |||||||| | ||||| |||||||| | ||| |||| || ||| ||||| |||||| Sbjct 2731951 CTCTGCTCGTCATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 2732010 Query 10055 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 10114 | || || ||||||||||||||| ||||||| ||||||||||||| | | ||| ||| Sbjct 2732011 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTT 2732070 Query 10115 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACC 10174 | |||||||||||||| | | |||||| | ||||||| ||| | | | | || | Sbjct 2732071 TCTGGACACCCTACAATGTGGCTCTCCTTATCTCTACCTATCAATCCATCTTATTTGGAC 2732130 Query 10175 TGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCT 10234 | | |||| | ||||| | ||||| ||| | ||||| | || | | |||| Sbjct 2732131 TTGACTGTGAACGGAGCAAGCATCTGGACCTGGTTGTGCTGGTGACGGAGGTGATCGCCT 2732190 Query 10235 ACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGAC 10294 || | ||||| ||| | |||||||||||||| || || | || |||| || | | Sbjct 2732191 ACTCCCACTGCTGCGTGAACCCAGTGATCTATGCCTTTGCTGGAGAGAGATTCCGGAAGT 2732250 Query 10295 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 10354 ||||| ||||||||||||||| | ||| ||| ||||| ||| |||||||| |||| Sbjct 2732251 ACCTGCACCACTTCTTCCACAGGCAAGTGCTCATGTACCTGGGCAGATACATCCCATTCC 2732310 Query 10355 TGTCTGGTGA 10364 | || |||| Sbjct 2732311 TTCCTAGTGA 2732320 Score = 253 bits (280), Expect = 2e-62 Identities = 607/910 (67%), Gaps = 11/910 (1%) Strand=Plus/Plus Query 176345 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATA 176403 ||| ||| | || ||| | |||||| || ||||| | || |||| | |||||||| Sbjct 2731418 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAACG 2731476 Query 176404 TCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTAC 176463 | | |||||||| || |||||| ||||| || | || || | || ||||| | | Sbjct 2731477 TGGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACC 2731536 Query 176464 TGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACT 176523 || | ||| |||| || || ||| |||| || || || || | || || ||||| |||| Sbjct 2731537 TGCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 2731596 Query 176524 ATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTG 176583 || | | | | ||| | ||| || || | | ||||||| || ||| ||| Sbjct 2731597 ATGTCAG---GGAGCATAACTGGGTCTTCGGCCATGACATGTGTAAGCTCCTCTCGGGGT 2731653 Query 176584 TGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGT 176643 | | ||||| |||||||| || |||||| ||| ||||| || || | ||||||| Sbjct 2731654 TTTATTACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGT 2731713 Query 176644 ATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCAT 176701 | || || ||||| ||||||| ||| || ||| | || || |||| ||| || Sbjct 2731714 ACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACCTTTGGTAT 2731771 Query 176702 AGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 176761 | ||| | | |||||| ||||||| | | | || ||||||||| | || Sbjct 2731772 CATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATTTT 2731831 Query 176762 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 176820 ||||| |||| | | | ||||| || || | || |||||| || Sbjct 2731832 CCATGGGACTGAAGA-GTTATTTCCAGGGTCTCTTTGCAGTGCTATTTACCCACAGGATA 2731890 Query 176821 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 176880 | | || ||||||| |||| | || ||| | || ||||| | | | Sbjct 2731891 CAGTAGATAGCTGGAGGCATTTCCACACTCTGAAAATGACCGTCTTGTGTCTCGCTCTCC 2731950 Query 176881 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 176940 |||||||| | ||||| |||||||| | ||| |||| || ||| ||||| |||||| Sbjct 2731951 CTCTGCTCGTCATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 2732010 Query 176941 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 177000 | || || ||||||||||||||| ||||||| ||||||||||||| | | ||| ||| Sbjct 2732011 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTT 2732070 Query 177001 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACC 177060 | |||||||||||||| | | |||||| | ||||||| ||| | | | | || | Sbjct 2732071 TCTGGACACCCTACAATGTGGCTCTCCTTATCTCTACCTATCAATCCATCTTATTTGGAC 2732130 Query 177061 TGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCT 177120 | | |||| | ||||| | ||||| ||| | ||||| | || | | |||| Sbjct 2732131 TTGACTGTGAACGGAGCAAGCATCTGGACCTGGTTGTGCTGGTGACGGAGGTGATCGCCT 2732190 Query 177121 ACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGAC 177180 || | ||||| ||| | |||||||||||||| || || | || |||| || | | Sbjct 2732191 ACTCCCACTGCTGCGTGAACCCAGTGATCTATGCCTTTGCTGGAGAGAGATTCCGGAAGT 2732250 Query 177181 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 177240 ||||| ||||||||||||||| | ||| ||| ||||| ||| |||||||| |||| Sbjct 2732251 ACCTGCACCACTTCTTCCACAGGCAAGTGCTCATGTACCTGGGCAGATACATCCCATTCC 2732310 Query 177241 TGTCTGGTGA 177250 | || |||| Sbjct 2732311 TTCCTAGTGA 2732320 Score = 93.3 bits (102), Expect = 5e-14 Identities = 172/251 (69%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 176429 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 176488 ||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| | Sbjct 2668200 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGACCT 2668141 Query 176489 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGAATGTATCATGATTGGA 176547 ||| || || || || |||| || | ||| |||| | | || | |||| |||| Sbjct 2668140 GCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTTGACGG----ATGACTGGA 2668085 Query 176548 CTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCC 176607 ||| ||| | || ||||||| | ||| || | | ||||| |||||||| Sbjct 2668084 TTTTCGGTGATGCCATGTGTAAGGTCCTCTCTGGGTTTTATTACACAGGCTTGTACAGCG 2668025 Query 176608 AGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAA 176667 || |||||| |||||||||||| || | || ||||| || || | ||| |||| || Sbjct 2668024 AGATCTTTTTCATCATCCTGCTGACGATTGATAGGTACCTGGCCATCGTCCATGCCGTGT 2667965 Query 176668 CTGCTTTGAGG 176678 ||| |||||| Sbjct 2667964 TTGCCTTGAGG 2667954 Score = 93.3 bits (102), Expect = 5e-14 Identities = 172/251 (69%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 9543 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 9602 ||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| | Sbjct 2668200 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGACCT 2668141 Query 9603 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGAATGTATCATGATTGGA 9661 ||| || || || || |||| || | ||| |||| | | || | |||| |||| Sbjct 2668140 GCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTTGACGG----ATGACTGGA 2668085 Query 9662 CTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCC 9721 ||| ||| | || ||||||| | ||| || | | ||||| |||||||| Sbjct 2668084 TTTTCGGTGATGCCATGTGTAAGGTCCTCTCTGGGTTTTATTACACAGGCTTGTACAGCG 2668025 Query 9722 AGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAA 9781 || |||||| |||||||||||| || | || ||||| || || | ||| |||| || Sbjct 2668024 AGATCTTTTTCATCATCCTGCTGACGATTGATAGGTACCTGGCCATCGTCCATGCCGTGT 2667965 Query 9782 CTGCTTTGAGG 9792 ||| |||||| Sbjct 2667964 TTGCCTTGAGG 2667954 >seq6472 Length=2227648 Score = 179 bits (198), Expect = 4e-40 Identities = 219/295 (74%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 145567 TGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACC 145626 || || | ||| || || | | |||||| || || |||||||||| || | ||| || Sbjct 2220099 TGCGGATTGTACCCTTCAATCTGAAAGTCTTCAGCTTTGAAGTCATCAATTTTCTCAACT 2220040 Query 145627 CGCCTCAGGATCCTGAGCCT-GGGAAAGGGCCGGGGGCTC-CTGGTCAGCTGGAGCTTCA 145684 | || ||| ||||| | |||||||| | ||| ||| ||| ||||| | |||| Sbjct 2220039 TTTCGAAGAATCTTGAGCTTTGGGAAAGGTCTGGGTTCTCGCTGA--AGCTGAATTTTCA 2219982 Query 145685 GGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGG 145744 | ||||| | ||| || ||||| | || || || |||| ||| | ||||| || | Sbjct 2219981 GTGGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTGTGTACAAAGTCACCTG 2219922 Query 145745 GCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGA 145804 ||| |||||||||| ||| || | |||||| || ||||||| ||||||||| ||||||| Sbjct 2219921 GCTTCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGA 2219862 Query 145805 AGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTC 145859 | ||||| || || |||||||| ||||| | |||||||||||||||||| ||||| Sbjct 2219861 AAGGCACGCCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTC 2219807 >seq3 Length=9913731 Score = 174 bits (192), Expect = 2e-38 Identities = 135/160 (84%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||||||| ||||||||| || || || ||||||||||||||||| | ||| Sbjct 3751602 CAGCGCCGCAGCCTCAGCCTGAGGGTCTTCAGATTCTCCCCCAGGGAGTTCACGTGCTCC 3751661 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | | ||||||||| || |||||||||||||||||||||||||||||| Sbjct 3751662 TTGAT---GTCTGGGTCGTGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 3751718 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCTTAA 138241 ||||||||||||| ||| ||||| ||||||||||||| || Sbjct 3751719 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCTAAA 3751758 Score = 114 bits (126), Expect = 2e-20 Identities = 83/96 (86%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980 |||| |||| ||| || | ||||||||||| ||||||||||| |||||||||||||||| Sbjct 3749296 CTCACTTTTGCATTTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACT 3749355 Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||||| |||||||| ||||| || ||||||| Sbjct 3749356 CACTCATGGCTTTGTAGACGCCTTTCTCTTGGAGCT 3749391 >seq7015 Length=9623085 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | |||||| || || |||| ||||||||| |||||||| ||| Sbjct 2250479 AGGCCCGTGATGTGCGCAATCATGTACGTGAGTAGGGCGTAGCTGGCGATGTTGAAAGGC 2250420 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| ||||| | |||||||||||||||||| ||||| | | | || Sbjct 2250419 ACGCCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 2250360 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| |||||| || ||||| ||||| Sbjct 2250359 ACATAGAACTGGCAGAGGGCGTGGCATGGAGGCAGTGCCAT 2250319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979997900960