Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq4015 320 2e-82 seq7126 257 2e-63 seq6927 123 3e-23 seq5904 123 3e-23 >seq4015 Length=13246081 Score = 320 bits (354), Expect = 2e-82 Identities = 273/337 (81%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 || ||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 2772268 AGTAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 2772209 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||||| ||||||| ||||||||||||||||||||| || ||||||||| Sbjct 2772208 ACGGGCACACCGTCAGGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAACATCGTTGCGG 2772149 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || ||||||| ||| ||||| | |||||||| Sbjct 2772148 CACACCGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 2772089 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||||||||| || |||||||||||||| || || |||| |||||||| ||| Sbjct 2772088 GGGGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGCCCCCGCACCGTTCACC 2772029 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 2772028 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 2771969 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || ||||| | |||| || ||| |||| Sbjct 2771968 AGGGAATTCAGAATCTCTTCGTTCTTGGTGTTCTCCT 2771932 Score = 208 bits (230), Expect = 9e-49 Identities = 198/253 (78%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 2771685 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGCCCAAGGC 2771626 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||| || | |||||||||||||| | Sbjct 2771625 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACTGTAGTGCCTCAGAGGGACGCCA 2771566 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | |||||||| || | ||| |||||| | | |||| | ||||||||| || || |||| Sbjct 2771565 CATTCTCGATAAGTAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCGG 2771506 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCG 83630 | |||||| || |||||||||||||| || || | |||| || || ||| | || | Sbjct 2771505 CCAGCGGGCGCGCCGAGAAGGCGTACACCGACTGGGCCGCTGCAGCCGCTAGCCGAGCAG 2771446 Query 83631 CGTACTTGGCACA 83643 | || |||| || Sbjct 2771445 CACACATGGCGCA 2771433 >seq7126 Length=14554755 Score = 257 bits (284), Expect = 2e-63 Identities = 265/346 (77%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 83296 CTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTT 83355 |||||||||||| |||||||| || || |||||||| || ||||| ||||| | ||| Sbjct 4341795 CTCGCACTTCTCAAAGAGCATGAAATTGGGCTCGAACCCACCACCAGGTCGGACCTACTT 4341736 Query 83356 CAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGG 83415 |||||| || ||||| | |||| || ||| ||||| | || |||||||| ||||| Sbjct 4341735 GAGGGAATTCAGAATCTCTTCGTTCTTGGTGTTCTCCTGAAGCCCAAACTGGTTGCACGG 4341676 Query 83416 GAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGT 83475 ||| || ||||| ||||| ||| | | || |||||||||||||||||||||||||| || Sbjct 4341675 GAAGCCGAGCACCACCAGGCCCTGGGGCCCAAGGCGCCGCTGCAGCTCGTTCATCTGGGT 4341616 Query 83476 GTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCC 83535 ||| |||||||||||| | |||||||||||||| || |||||||| || | ||| ||| Sbjct 4341615 GTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCACATTCTCGATAAGTAGCACCTTGCC 4341556 Query 83536 CCGTAAGAAGCCTAAGCTCACAGG--TTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCG 83593 ||| | | |||| | ||||||||| | || | || | |||||| || ||||||||| Sbjct 4341555 CCGCAGGGAGCCCAGGCTCACAGGCCCCCCCCGCGGGCCAGCGGGCGCGCCGAGAAGGCG 4341496 Query 83594 TACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCGCGTACTTGG 83639 ||||| || || | |||| || || ||| | || || || ||| Sbjct 4341495 TACACCGACTGGGCCGCTGCTGCCGCTAGCCGAGCAGCACACATGG 4341450 Score = 168 bits (186), Expect = 8e-37 Identities = 182/245 (74%), Gaps = 17/245 (7%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 4342090 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 4342031 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||||| ||||||| ||||||||||||||| || Sbjct 4342030 ACGGGCACACCGTCAGGGCCCACCAGGAACTTCTCGAAGTT-----------------GG 4341988 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||| | || | || ||||||| ||| ||||| | |||||||| Sbjct 4341987 CACACCGGAGACCACGTGATTAACTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 4341928 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||||||||| || ||||||||||| || || || ||| ||||| || ||| Sbjct 4341927 GGGGCTGGCAGGGCCTCCCGCAGGAAGGCGAACAGAGGGTGCACCCCCGCACCATTCACC 4341868 Query 83297 TCGCA 83301 ||||| Sbjct 4341867 TCGCA 4341863 >seq6927 Length=1065165 Score = 123 bits (136), Expect = 3e-23 Identities = 326/491 (66%), Gaps = 15/491 (3%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 || ||| || |||||| ||||| | | | ||| || || | ||||||| | || Sbjct 662893 AGGAGGCGCTTGATGTCAGGCTCAATGTTGATGGTTGGGAAGGTGCGGCTGTAGCGTCGG 662952 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | |||| || || | | | | ||||||||| |||||||||||||| || ||| Sbjct 662953 AAGGGCTCTCCCTCCGGCACTATGAGGAACTTCTCAAAGTTCCAGGCCACATCTGAACGG 663012 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGT-----GCTCATGTCGT 83231 | ||| ||| ||| ||||||| ||| ||| ||| ||| | | |||| | Sbjct 663013 CGCACGGGACTCCAAATGATGAGCTTGGGATCGGTCATGAGGGAAAATGGGTCATCATGA 663072 Query 83232 CGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCG 83290 | |||| | || | ||| || ||| ||||||||| ||||| | | ||| || Sbjct 663073 GGGTAGGGGA--GCTTGTCCT-TC--AGGTAGGCGAAGACAGGATGCTCATTCTGC-CCA 663126 Query 83291 TTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACG 83350 || ||||| || || | || || | ||| | |||| | | || |||||||||||| Sbjct 663127 TTCACCTCACATTTTTGGACAAGGGTGAAGGTGGGCTGGTATCCACCCCCAGGACGGACA 663186 Query 83351 TGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTA 83410 | ||| || || |||||| || |||| ||| ||||| | || || ||||| Sbjct 663187 TACTTGAGACTGTTCAGGATCTCCTCACTCTGACAGTTCTCCTGAGGTCCAAATTGGTTG 663246 Query 83411 CACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATC 83470 || ||||| ||||| || ||||| | || | | ||| | |||||||||||| | | Sbjct 663247 CAAGGGAAGCCAAGGACCACCAGGCGCCTGG---GAAAGCGGCACTGCAGCTCGTTGAGC 663303 Query 83471 TGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACC 83530 || ||| | ||||| || | |||||||| || || || ||||| || |||| | || Sbjct 663304 TGGGTGAAGTCCCGAGTGGTTGTGCCTCAGAGCGAAGCCACATTCTCAATCAGCACGGCC 663363 Query 83531 CGGCCCCGTAA 83541 | |||||| || Sbjct 663364 CTGCCCCGGAA 663374 >seq5904 Length=12052029 Score = 123 bits (136), Expect = 3e-23 Identities = 207/291 (71%), Gaps = 15/291 (5%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 9393054 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 9393112 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| | ||| | ||||||| Sbjct 9393113 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGTAAGCAGTACAACTGCA 9393172 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || || ||| ||| | | |||| ||||| Sbjct 9393173 GCGGCTCCCTGGGCAAGAAGCAG-CTGGATCCGTCCCGCATCAAGCTCATCCGCCACTAC 9393231 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643 |||||| |||| ||||| ||||| ||||| ||||| |||| | ||||| | Sbjct 9393232 GTGCAGCTGCTCTACCCG----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 9393287 Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || ||||| ||||||||||||||||| | |||||| || |||||| Sbjct 9393288 GGGCAAACTGGATGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 9393336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608696926884960