Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq7038 118 9e-22 seq5126 114 1e-20 seq3882 96.9 3e-15 seq2558 86.0 5e-12 seq4805 84.2 2e-11 >seq7038 Length=1003649 Score = 118 bits (130), Expect = 9e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || |||||||| || ||||| ||||| | || || || | || |||||||| Sbjct 394442 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 394501 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| | || || ||||||||||| ||| | ||||||||| || ||| || Sbjct 394502 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTG 394561 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | ||| || |||| ||||||| |||| ||| |||||||||||||| Sbjct 394562 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 394621 Query 21153 AACGTTTTGACAAATATTTGCATTTTGA 21180 | || || || || || |||||| ||| Sbjct 394622 AGGGTCTTCACGAAGATCTGCATTCTGA 394649 >seq5126 Length=8658521 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | |||||||| |||| ||||||||||| || ||||| ||||| | | Sbjct 3005847 CCACCTCTGAGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3005788 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| || || ||| | || || ||||||||||| || Sbjct 3005787 AGGGTACGACCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 3005728 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || ||||||| || || | | | || |||| |||||| Sbjct 3005727 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 3005668 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| ||||||||||| || | || || || || || |||||| Sbjct 3005667 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATT 3005620 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | |||||||| ||||| |||||||| || || ||||| ||||| | | Sbjct 3006075 CCACCTCTGAGGCGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 3006016 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||| || || ||| | || | ||||||||||| || Sbjct 3006015 AGCGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3005956 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||||| || || | ||| || || | |||||| Sbjct 3005955 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACC 3005896 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||||||| || | || || || || || ||||| Sbjct 3005895 TCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3005849 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||| || || ||||| || || | |||||| | | || Sbjct 3006288 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGTCCATCT 3006229 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || | ||||||||||| || | |||||||||||| Sbjct 3006228 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 3006169 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | || || | |||||| || | ||| |||||| Sbjct 3006168 TGAATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTC 3006109 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || || ||||| Sbjct 3006108 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3006077 >seq3882 Length=6966343 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || ||||| || || ||||||||||| | || || ||| | || |||| ||| Sbjct 6145593 TGCAGGGTCGACTCTTTCTGGATGTTATAGTCAGAAAGAGTGTGGTCATCTTCCACCTGC 6145652 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||| | ||| | |||| ||||||| || | | | ||||||||| || |||||| Sbjct 6145653 TTGACTGCAAAGTTAAGCGTCTGCTGCTCGGGGAGAATGCCTTCCTTATCCTGGATCTTG 6145712 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | ||| || |||| ||||||| || | || ||||||||||| ||| Sbjct 6145713 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGCAATGGTCTTGCAGGTA 6145772 Query 21153 AACGTTTTGACAAATATTTGCATTTTGA 21180 | | || || || || |||||||||| Sbjct 6145773 AGGCTGTTCACGAAGATCTGCATTTTGA 6145800 >seq2558 Length=10987700 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||| ||| |||||||| || || ||||| ||||| | Sbjct 486483 CCACCTCGCAGGGGCAACACCAGGTGCGGGGTGGACTCTTTGTGGATGTTGTAGTCTGAG 486424 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || ||| | || |||||||||||||| ||| | || || | ||||||||| || Sbjct 486423 AGAGTGTGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 486364 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| || || ||| || | | | ||| |||| |||||| Sbjct 486363 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATAGTGTCACTGGGCTCGACC 486304 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| ||||| ||||| || | || || ||| || ||||| || Sbjct 486303 TCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTTGTAAAGATCTGCATGTT 486254 >seq4805 Length=5228064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| | ||| | ||| |||||||||||||| || ||||| | | Sbjct 4473639 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 4473580 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || ||||| || ||||| ||| | || ||||| ||||| || || Sbjct 4473579 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 4473520 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| || || | | | ||||| ||| || Sbjct 4473519 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 4473460 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| |||||||| || || | ||||| || || || ||||||||| Sbjct 4473459 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 4473409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422191660168784