Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq4805 113 4e-20 seq12126 109 5e-19 seq11570 109 5e-19 seq6459 109 5e-19 seq5149 100 2e-16 seq1 100 2e-16 seq7115 84.2 2e-11 seq4138 84.2 2e-11 >seq4805 Length=5228064 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 4473410 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 4473469 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 4473470 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 4473529 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 4473530 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 4473589 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||| ||||||||||| | ||||| Sbjct 4473590 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 4473624 >seq12126 Length=7615049 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 7457745 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 7457804 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 7457805 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 7457864 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||| | |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 7457865 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 7457924 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||| ||||||||||| | ||||| Sbjct 7457925 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 7457959 >seq11570 Length=13276302 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||||| ||||| | ||||| | ||||| ||| || | |||||| Sbjct 11749151 AAAATGCAGATTTTCATGAAAACCCTTACGGGGCAGACCATCACCCTTGAGGCTGAACCC 11749092 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | ||| || || || || ||||| | || ||| Sbjct 11749091 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTGAT 11749032 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 11749031 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 11748972 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||| ||||||||||| | ||||| Sbjct 11748971 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 11748937 >seq6459 Length=16685579 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 968730 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 968789 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 968790 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 968849 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||| | |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 968850 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 968909 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||| ||||||||||| | ||||| Sbjct 968910 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 968944 >seq5149 Length=2416856 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| | | |||||| Sbjct 1496344 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCCAGGTTGAACCC 1496285 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || | | | || | ||| || || ||||| ||||| | || ||| Sbjct 1496284 TCGGATATGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1496225 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 1496224 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 1496165 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||| ||||||||||| | ||||| Sbjct 1496164 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 1496130 >seq1 Length=19716903 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 12236907 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 12236848 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | || | ||| || || ||| | ||||| | || ||| Sbjct 12236847 TCGGATACGACAGAAAATGTAAAGGCCAAGATCCAGGATGAGGAAGGAATTCCTCCTGAT 12236788 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||| | |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 12236787 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 12236728 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||| ||||||||||| | ||||| Sbjct 12236727 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 12236693 >seq7115 Length=1795964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || || | ||||| | | ||| || || || ||| || |||||| Sbjct 163860 AAAATGCAGATTTTTGTGAAAACCCTAAGGGGGAAGACTATCACCCTTGAGGTTGAACCC 163919 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| |||| | || | ||| || || ||||| ||||| | || ||| Sbjct 163920 TCAGATACGGCAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 163979 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||| | ||| |||||||| ||| || | || | | Sbjct 163980 CAGCAAAGACTGATCTTTGCTGGCGAGCAACTGGAAGATGGACGTACTTTGTCTGACTGC 164039 Query 25212 AATATTCAAAAGGAATCTACTCTTCA 25237 || ||||||||||| ||||||||||| Sbjct 164040 AACATTCAAAAGGAGTCTACTCTTCA 164065 >seq4138 Length=9750826 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | | ||| || ||||| ||| ||| ||| || Sbjct 3987800 AAAATGCAGATTTTCGTGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGTTGAAACC 3987859 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | ||| || || ||||| ||||| | || | | Sbjct 3987860 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGCT 3987919 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||| ||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 3987920 CAGCAAAGAGGGATCTTTGTTGGCAAGCAACTGGAAGATGGATGGACTTTGTCTGACTAC 3987979 Query 25212 AATATTCAAAAGGAATCTACTCTTCA 25237 |||||||||||||| ||||||||||| Sbjct 3987980 AATATTCAAAAGGAGTCTACTCTTCA 3988005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410731093565336