Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6460 111 2e-19 seq4649 111 2e-19 seq5126 109 6e-19 seq2558 109 6e-19 seq7237 104 3e-17 seq7038 100 3e-16 seq5949 98.7 1e-15 seq2 98.7 1e-15 seq4871 89.7 6e-13 seq4805 84.2 3e-11 >seq6460 Length=10151297 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 42970 GCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGT 43029 ||||||||| |||| ||| ||| || || || ||||| || | ||||| || | | Sbjct 3934078 GCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCAT 3934137 Query 43030 CATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGT 43089 | || ||||| || || || ||||| || |||||||||| | || | | |||||||| Sbjct 3934138 CTTCCAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGT 3934197 Query 43090 CCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 ||||| | |||| || | | ||||| || | || || || | ||||||| Sbjct 3934198 GTTGAATTTTGTCTTTGTCATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 3934257 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 |||||||||| || ||||| |||||||| ||||| ||| || Sbjct 3934258 TTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGCG 3934298 >seq4649 Length=3067355 Score = 111 bits (122), Expect = 2e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||||||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 2563518 TTTTCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 2563577 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 2563578 ACTATACTAACGAGGA 2563593 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2578331 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2578390 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2578391 TACTAACGAGGA 2578402 >seq5126 Length=8658521 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | ||||| |||| ||| |||||| || || ||||| |||| | Sbjct 3005847 CCACCTCTGAGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3005788 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| || || || || || | ||||||||||| || Sbjct 3005787 AGGGTACGACCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 3005728 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| || ||| ||| |||| || | | ||||| || | || || Sbjct 3005727 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 3005668 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| |||||||| ||||| || || ||||| || ||||| |||||| Sbjct 3005667 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATT 3005620 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2988309 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2988250 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2988249 TACTAACGAGGA 2988238 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2991990 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2991931 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2991930 TACTAACGAGGA 2991919 >seq2558 Length=10987700 Score = 109 bits (120), Expect = 6e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42970 GCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGT 43029 ||||||||| ||| ||| ||| || || || ||||| || | ||||| | | | Sbjct 486470 GCAACACCAGGTGCGGGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGTGGCCAT 486411 Query 43030 CATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGT 43089 | || ||||| || || || ||||| || ||||||||||| | || | | |||||||| Sbjct 486410 CTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGT 486351 Query 43090 CCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 | ||| |||| | ||||| || | | ||||| || | || || || | |||||| Sbjct 486350 CT-TGAATTTTGGCTTTGACGTTCTCAATAGTGTCACTGGGCTCGACCTCAAGGGTGATG 486292 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 ||||||||||| || |||||| |||||| ||||| ||| Sbjct 486291 GTTTTGCCCGTGAGGGTCTTTGTAAAGATCTGCATGTTT 486253 >seq7237 Length=5934118 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 4328778 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4328837 Query 60125 ATACTACCGAGGATTGA 60141 |||||| |||||| ||| Sbjct 4328838 ATACTAACGAGGAGTGA 4328854 >seq7038 Length=1003649 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| ||||| || | || || |||||||| || || || Sbjct 394453 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 394512 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||||| || | || ||||| ||| |||||| || | | Sbjct 394513 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATT 394572 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 394573 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 394632 Query 43172 AAAGATTTGCATT 43184 ||||| |||||| Sbjct 394633 GAAGATCTGCATT 394645 >seq5949 Length=1925306 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1859606 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1859665 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1859666 TACTAACGAGGA 1859677 >seq2 Length=23512408 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7189186 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7189127 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7189126 TACTAACGAGGA 7189115 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATC-GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 9717884 TCTCCCCGTCGGGGAATATGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 9717825 Query 60124 TATACTACCGAGGATTG 60140 ||||||| |||||| || Sbjct 9717824 TATACTAACGAGGAGTG 9717808 >seq4871 Length=5485048 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||||| |||||||||||||||||||||||| | |||||||| | ||| ||||||||| Sbjct 2630968 CTCCTCATCAGGGAATCGAACCCTGGTCTCCCACATGACAGGCAGGGATATTCACCACTA 2630909 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2630908 TACTAACGAGGA 2630897 >seq4805 Length=5228064 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | || |||||||||||||||||| |||| || ||| || | || Sbjct 4473625 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 4473566 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || ||||| ||||| || || |||| ||||| || | || | | ||||| || Sbjct 4473565 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 4473506 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | ||| || | ||| || |||| |||||||| Sbjct 4473505 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 4473446 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || ||||| || || || || || || |||||||| Sbjct 4473445 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 4473410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571723793322720