Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3971 246 3e-60 seq2336 111 1e-19 seq7904 98.7 9e-16 >seq3971 Length=4903791 Score = 246 bits (272), Expect = 3e-60 Identities = 613/920 (67%), Gaps = 22/920 (2%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | | ||| ||| ||| || | |||||| ||| ||| Sbjct 744299 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 744358 Query 15945 TTTGATATTCAC--TAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 | ||||| || | | |||||||| |||||||| || || |||| | ||||||||| Sbjct 744359 TCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATT 744413 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAA 16059 |||||||| ||||| || || | | || | | | | || | |||| ||||| Sbjct 744414 CTCCATAAAGTCAAATGGGTTCTCT--ACTCT-GAAAACCTTGCTAAAACCCAGTTCCAG 744470 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 || ||| || |||||||| || || | || ||||||| | || ||||| || || Sbjct 744471 CATG--TCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAAT 744528 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 || ||||| | || || || | || | | |||||| ||| || | || || Sbjct 744529 AGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAAT 744588 Query 16180 TATATCTCTTACTACACTATTTAAC-GGAGGGTTTAATAAGTGTTTAAACATTATACAAG 16238 ||| ||||||||| | || | | || || || | |||||| ||||| | |||| Sbjct 744589 TATTTCTCTTACT-CTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAG 744647 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 |||||||||| || || || || || || || || | || || |||||||| || || | Sbjct 744648 CAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAG 744707 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 |||| ||||||||||| || | ||| ||||| | ||||| ||||||||||| || | Sbjct 744708 GCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGC 744764 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcc 16418 |||| |||| ||||| | || | || ||||| || || | ||| | |||| Sbjct 744765 CTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCC 744824 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | | ||||||| ||| || | || ||||| ||| | || || ||||| | | Sbjct 744825 AGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGA 744884 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | |||||||| |||| || ||||| || || | |||||||||||||| | Sbjct 744885 GAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACATTTCAG 744944 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| || || || || || || || || ||| | || || | ||||| | || || | Sbjct 744945 AATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAA 745004 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 |||| | ||| | || | |||||||| || ||||| ||||| || |||||||| | Sbjct 745005 CTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGA 745064 Query 16659 ACGCAAGTATGTGTTTAATAAAAtttttttCGT-TATCTGAAAGTTTTAACCAGTCAGAA 16717 | | || || || ||||||| | | || | || | | || ||||| || Sbjct 745065 AAACCAGAATATGAGATATAAAATCTCTCTCCTCGGGCTTCAGGGATT-CCCAGTGCCAA 745123 Query 16718 AAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATAC 16777 | || || || | || ||||| || | ||||| || ||||| | ||||| |||||| Sbjct 745124 ACGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATAC 745183 Query 16778 ATTTTCCATATGTCTTCGTA 16797 || | ||| || || | ||| Sbjct 745184 ATCTGCCAGATATCATGGTA 745203 >seq2336 Length=9258750 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || |||||| | | | || |||||||| | Sbjct 5801410 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAAAAC 5801351 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 5801350 GCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 5801291 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 5801290 CCATAAAATCAAAAGGATTTTCTG 5801267 >seq7904 Length=13651311 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 3487598 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3487657 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 3487658 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 3487717 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 3487718 ACGACACGTTCACC 3487731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462436124906400