Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq4126 1523 0.0 seq4871 127 1e-24 >seq4126 Length=16670845 Score = 1523 bits (1688), Expect = 0.0 Identities = 1360/1696 (80%), Gaps = 51/1696 (3%) Strand=Plus/Minus Query 107098 GCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAA------------GGGTCT-TA 107144 ||| ||||| || ||||||||||||| |||||| || | |||| | || Sbjct 12077503 GCTAGTTTGTAGGGTCAGGTTACAGATCTCCATCAACGAACCAGATGTAAGGGGTTTCTA 12077444 Query 107145 GGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTGG 107204 |||||| ||| ||| |||||| ||||| | |||| | | | ||| |||||| | ||| Sbjct 12077443 GGCAGGTCTTTACTAAGGATACTTGTCCAGGTAAGAACTATTT-TTTGCCATCAGTTTGG 12077385 Query 107205 AGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCC 107258 | |||||||||||||| |||| |||||||||||| | ||||||||| |||||| Sbjct 12077384 AATTGAACTTGATGTTTCTGGGAATGATTAGTTTGTAACTGGAGGCATTTTATTCTGTTG 12077325 Query 107259 AAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATCTCCCATCCCAT 107314 ||||||| | |||||| |||||||||||| ||| ||| |||| ||| || | || | Sbjct 12077324 AAGGATCGTGTTCTCCTCTTCCTTGCCTGTGCTCAATCTCCACCTG-TCTACCCTTCCGT 12077266 Query 107315 GAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTG 107374 || |||| | ||||||||| || |||||| ||| | |||||||||||||||| Sbjct 12077265 GACAATGGTTCAGTGGAAGAAA---CTCTGCCGGCAGCATTACTTGTGGGCCCTGGGCTG 12077209 Query 107375 CTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGA 107434 |||||||||||||| | ||| |||||| |||||| | ||||| || |||| || Sbjct 12077208 CTATATGCTGCTGGTCATTGCGGCTCTGAAACTTTCTTTAAGGTTGAAGTGTGGCTCTGA 12077149 Query 107435 TTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAA 107494 | ||||| ||||||||||||||| || || || ||| |||||||| | || ||||| || Sbjct 12077148 CTACTTGGGTCTGGAGTCCAGGGAATTTCAAAGCCAGTACTGTAGGAATATCTTGTATAA 12077089 Query 107495 TAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCA 107554 | |||||| |||||||||||||| || ||||||||||| |||||||| |||||||||| Sbjct 12077088 TTCCCTGAAACTGCCAGCAAAGAGGTCTATCAACTGTTCAGGGATCACCCGAGGGGACCC 12077029 Query 107555 GGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCT 107614 ||||| ||| | || || || | | |||||||| || ||||| |||||| |||| | Sbjct 12077028 AGAAGCCGTGTTTCATGCTCTTGTGAATAACCTGGAGGTCAAGAAGAAGCGGGAGCCTTT 12076969 Query 107615 CACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAA 107674 || | |||| | || ||| | | |||||||||||||| ||||||||||| ||||||| Sbjct 12076968 TACAGACACCCACTATCTCTCCCTCACCAGAGACTGTGAACGCTTCAAGGCGGAAAGGAA 12076909 Query 107675 GTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||||||||||||| ||||| ||||||||| | || ||||| ||||| ||||| ||||| Sbjct 12076908 GTTCATACAGTTCCCGCTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCGTACTCTATGGT 12076849 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | | |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| Sbjct 12076848 GATTCATGAGAAGATTGAAAACTTTGAAAGGCTACTGCGAGCTGTGTATGCCCCTCAGAA 12076789 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||| || Sbjct 12076788 CATATACTGCATCCACGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAAAGC 12076729 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 |||||||| |||||||| ||||||||||| ||||||||| |||| | |||| ||||||| Sbjct 12076728 AATTATTTCATGCTTCCCAAATGTCTTCATAGCCAGTAAGCTGGTTCGGGTGATTTATGC 12076669 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT 107974 |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 12076668 CTCCTGGTCCAGGGTGCAAGCTGACCTCAACTGCATGGAAGACTTGCTCCAGAGCTCAGT 12076609 Query 107975 GCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGA 108034 ||||||||| ||||| ||||||||||||||||| ||||| || |||||| |||||| || Sbjct 12076608 GCCATGGAAATACTTCCTGAATACATGCGGGACGGACTTTCCTCTAAAGAGCAATGCTGA 12076549 Query 108035 GATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTC 108094 |||||||| ||| |||||||||||||| || | ||| || |||||| | ||||||||| | Sbjct 12076548 GATGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGCATGGAGACAGAGGTACCTCC 12076489 Query 108095 TGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACCC 108151 | || |||| ||| |||||| |||| | || |||| ||| ||||||| | ||| Sbjct 12076488 TAAGCACAAACAAACCCGCTGGGAATATCACTTTGAGGTAGTGGGAGACACATTACACCT 12076429 Query 108152 TACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTA 108211 ||||| ||||| |||||| ||||||||| |||||||| | ||||| ||||||||||| || Sbjct 12076428 TACCAACAAGAAGAAGGATCCTCCCCCTTATAATTTAACTATGTTTACAGGGAATGCATA 12076369 Query 108212 TTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACT 108271 | ||||||| || |||| |||||||||||||| || | ||||||||||||||| ||| Sbjct 12076368 TATTGTGGCTTCCCGAGATTTTGTCCAACATGTTTTGAAGAACCCTAAATCCCAACAACT 12076309 Query 108272 GGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG 108331 | |||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 12076308 GATTGAATGGGTAAAAGACACCTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGCG 12076249 Query 108332 TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGAC 108391 ||| | ||||||||||||||||||||| |||||||||||||| ||||||||||| |||| Sbjct 12076248 TGCACGGTGGATGCCTGGCTCTGTTCCCAGCCACCCCAAGTACGACATCTCAGACCTGAC 12076189 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 | | || |||||||| || || |||||| || || ||||| || | ||| || || Sbjct 12076188 TTCTATTGCCAGGCTGGTAAAATGGCAGGGTCATGAAGGAGACATCGATAAGGGTGCTCC 12076129 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 ||||| || |||||||||||||| | | |||| ||||| |||| ||||| |||||| | Sbjct 12076128 TTATGGCCCTTGCTCTGGAATCCACCAGCGGGCTATCTGTGTTTATGGGGCTGGGGACTT 12076069 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 | ||||||| || || ||||||||| | ||||| |||||||||||||| | ||| ||||| Sbjct 12076068 GCACTGGATGCTTCAAAACCATCACTTGTTGGCCAACAAGTTTGACCCAAAGGTAGATGA 12076009 Query 108572 TAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACT 108631 ||| | || |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 12076008 TAATGCTCTTCAGTGCTTAGAAGAGTACCTACGTTATAAGGCCATCTATGGGACTGAACT 12075949 Query 108632 TTGAG-----CT------GCA-------CTGT-GGGCCAGGGACTGTGCCAACATGCCCA 108672 ||||| || ||| |||| |||| || | ||| | ||||||| || Sbjct 12075948 TTGAGACACACTATGGGAGCATTGCTACCTGTGGGGCGAGAGCATGTACAAACATGCTCA 12075889 Query 108673 GGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCA 108732 | | |||||| || ||| ||||||| ||| ||| || || ||| | |||||||| | Sbjct 12075888 GAACTTACTGGGACAGTG-CGGGTGGGAGACCAGGCCTTTGCAATTCGCGGCATCCCTTA 12075830 Query 108733 GGGTCAGAGGGCTGCT 108748 || | || || ||||| Sbjct 12075829 GGATAAGGGGTCTGCT 12075814 >seq4871 Length=5485048 Score = 127 bits (140), Expect = 1e-24 Identities = 571/896 (64%), Gaps = 49/896 (5%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | ||| Sbjct 1010752 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAG 1010693 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||||||| | ||| | ||| |||||||| | || || | Sbjct 1010692 ATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 1010633 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || ||| ||| || | | || || || | | ||| |||| Sbjct 1010632 CATGTGGACACAAAATCC---GAGGATTCCTATTTAGCTGCAGTGACAGGCATCGCTTCC 1010576 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| |||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 1010575 TGTTTCAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 1010516 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCA--TGG 107981 | || || |||||||| ||||| ||| | ||| ||| | | | ||||| | ||| Sbjct 1010515 CGGGTTCAGGCTGACCTTAACTGCATGAAGGAC---CTCTATGCAATGAGTGCAAACTGG 1010459 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || || || || || ||||| || || ||| Sbjct 1010458 AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTC 1010399 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG---TACCTTCTGAG 108098 | || ||| |||| | ||| | ||||| |||| | ||| | || || | Sbjct 1010398 AGGAAGCTGAAGTTGTTAATGGGAGAAAACAGCCTGGAAACGGAGAGGATGCCATCCCAT 1010339 Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGT---------------GACAGACACA 108143 ||| || | | |||||| | || |||||||| |||| ||||| Sbjct 1010338 ---AAAGAAGAAAGGTGGAAAAAGCGGTATGAGGTCATTAATGGAAAGCTGACAAACACA 1010282 Query 108144 CTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGG 108203 | || ||| ||| ||||| | || | ||| | || | || Sbjct 1010281 GGG------ACTGTCAAAATGCTT---CCTCCGCTCGAAAC---ACCTCTTTTTTCTGGC 1010234 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCC 108263 | |||||| ||||||| | | | | | ||| |||| || | || ||| | Sbjct 1010233 AGTGCCTACTTTGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAAACTC 1010174 Query 108264 CAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACC 108323 |||| | | || |||| ||||||| || ||||| || || | |||||||||||| Sbjct 1010173 CAAAAGTTTATGGAGTGGGCGCAAGACACATACAGCCCTGATGAGTATCTCTGGGCCACC 1010114 Query 108324 CTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCC-AAGTATCACATCT 108381 | ||| | ||| || | | || ||||| || || |||| || ||||| | | | Sbjct 1010113 ATCCAGAGGATTCC-TGAAGTCCCGGGCTCACTTTCT-GCCAGCCATAAGTACGATTTGT 1010056 Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441 | |||||| || | |||||| | ||||||||||| ||| ||||| ||||| || Sbjct 1010055 CTGACATGCAAGCAGTTGCCAGGTTTGTCAAGTGGCAATACTTTGAGGGTGATGTTTCCA 1009996 Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501 ||| || || || | |||||| ||| |||| | | | | ||||||| || | Sbjct 1009995 AGGGTGCCCCGTACCCTCCCTGCGATGGGGTCCACGTGCGCTCGGTGTGCATTTTTGGAG 1009936 Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || ||| || ||||||| || | ||||| ||| | || || || ||||||||| Sbjct 1009935 CTGGTGACTTGAACTGGATGCTGCGCAACCACCACTTGTTTGCCAATAAGTTTGAC 1009880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348213094840776