Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq5126 131 1e-25 seq6460 122 7e-23 seq2558 102 6e-17 seq7038 100 2e-16 seq6583 87.8 1e-12 seq3960 84.2 2e-11 >seq5126 Length=8658521 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| |||||| ||| ||||||||| ||||||||||| | Sbjct 3005847 CCACCTCTGAGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3005788 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || |||||||| || |||| || ||| ||||||||||| Sbjct 3005787 AGGGTACGACCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 3005728 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || || ||| ||| || | | | | |||| | ||| ||| Sbjct 3005727 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 3005668 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| |||||||||||||| ||||| ||||| Sbjct 3005667 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 3005621 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | ||||||||||| ||| ||| ||||| |||||||| || | Sbjct 3006303 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAC 3006244 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| ||||| || || || ||||||| ||| ||||| ||||| Sbjct 3006243 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3006184 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| ||| ||| ||| || | | | | |||| | ||| ||| Sbjct 3006183 ATGCCTTCCTTGTCCTGAATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACC 3006124 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| ||||| |||||||| ||||| ||||| Sbjct 3006123 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3006077 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| ||||| ||| ||| ||||| ||||||||||| | Sbjct 3006075 CCACCTCTGAGGCGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 3006016 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || ||||| || || ||||||| ||| ||||| ||||| Sbjct 3006015 AGCGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3005956 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| || ||| ||| || | | | | |||| | ||| ||| Sbjct 3005955 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACC 3005896 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | |||||| |||||||| ||||| |||||||| ||||| ||||| Sbjct 3005895 TCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3005849 >seq6460 Length=10151297 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||| |||||| ||| ||| ||||| ||||||||||| || ||| | || Sbjct 3934080 AACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCT 3934139 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| ||||| ||||| ||||||| |||| ||||| || || | ||||||||||| Sbjct 3934140 TCCAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTGT 3934199 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| | || | | | | | |||| | ||| ||||| | ||| || || Sbjct 3934200 TGAATTTTGTCTTTGTCATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTT 3934259 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||||||| || |||||||||||||| |||||||| Sbjct 3934260 TTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 3934294 >seq2558 Length=10987700 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || || |||| |||| | ||| ||| || || ||||||||||| Sbjct 486484 GCCACCTCGCAGGGGCAACACCAGGTGCGGGGTGGACTCTTTGTGGATGTTGTAGTCTGA 486425 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | | | || ||||| ||||| ||||| ||||||| ||||| ||||| || || Sbjct 486424 GAGAGTGTGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 486365 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| |||||| || || | | | |||| | ||| || Sbjct 486364 GATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATAGTGTCACTGGGCTCGAC 486305 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| | ||| || || |||||||| || ||||| |||||| |||||||| Sbjct 486304 CTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTTGTAAAGATCTGCATGTT 486254 >seq7038 Length=1003649 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| || ||||||||| ||||||||||| || ||| | || ||||| || Sbjct 394442 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 394501 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || || | || ||| |||||||| || | || ||||| ||| ||||| Sbjct 394502 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTG 394561 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| | ||||||||||| ||| || |||||||| ||| Sbjct 394562 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 394621 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||| ||||| Sbjct 394622 AGGGTCTTCACGAAGATCTGCAT 394644 >seq6583 Length=2948085 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | | || |||||| ||| ||| ||| |||| |||||| Sbjct 72611 GCCACCTCGCAGGCGCAGCATCAGGTGCAGGGTGGACTCTTTCCAGATGTCGTAGTCTGA 72670 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || |||| ||||| ||||| | ||||| |||| ||||| || || Sbjct 72671 GAGAGTTCGGCCATCCCCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGG 72730 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| |||||| || || || | | |||| | || || Sbjct 72731 GATACCCTCCTTGTCTTGAATTTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTGAC 72790 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | || || ||||||||||| || |||||||||||||| ||||| Sbjct 72791 CTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAGATCTGCAT 72838 >seq3960 Length=6554637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/206 (70%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||| |||||| || ||| ||||| |||||| |||| | || | | || | |||| Sbjct 1989238 CCAGGTGCAGGATGGACTCTTTCTGGATGTTGCAGTC--TGAGAGAGTG--CGGC-TCCA 1989292 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | ||||| || || ||||||| |||| ||||| | || | ||||||||||| || Sbjct 1989293 GCTGTTTGCCCGCAAATATCAGATGCTGCTGGTCAAGTGGAATGCCCTCCTTGTCTTGAA 1989352 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| ||| || | | | |||| | ||| ||||| | ||| || ||||||| Sbjct 1989353 TTTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 1989412 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGC 45334 | || || |||||||||||||| ||| Sbjct 1989413 CTGTGAGGGTCTTCACAAAGATCTGC 1989438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395012008215604