Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3971 253 2e-62 seq5093 132 5e-26 seq7904 114 1e-20 seq7605 86.0 6e-12 >seq3971 Length=4903791 Score = 253 bits (280), Expect = 2e-62 Identities = 504/740 (68%), Gaps = 16/740 (2%) Strand=Plus/Plus Query 13904 ACGCCCATTTTTTGATATTCAC--TAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCA 13961 || ||||| | ||||| || | | ||||| || ||||||||||| || ||| || Sbjct 744349 ACTCCCATCCTCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCA 744403 Query 13962 GTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTA 14021 |||| ||||| |||||||| |||||||| || | | || || || | |||| | Sbjct 744404 GTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCA 744463 Query 14022 GTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCA 14081 |||| | | ||| || || | |||||||| |||| ||||| | ||||||| Sbjct 744464 GTTCCAGCATG--TCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCA 744521 Query 14082 TACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCT 14141 | || || | || ||||| | | || | ||||| | |||||| ||||| | Sbjct 744522 TCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCAT 744581 Query 14142 CGTTTATAATAA-TCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT 14200 | | || || || || | | | || | | | | || ||||| || || Sbjct 744582 TGATAATTATTTCTCTTACTCTCTCCTCCAGTGGTTTG-TGTACCAGGTGTTTGAACATC 744640 Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 | || ||||||||||| || | ||||||||||| ||||||||||| || |||||||| Sbjct 744641 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTG 744700 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 | || ||||||| ||||||||| || | ||| ||||| | || || | || |||||| Sbjct 744701 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG 744760 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 | | || || |||||||||| ||| | ||||| ||| | | |||| ||||| | Sbjct 744761 A---TGCCTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCC 744817 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 ||||| | ||||| || | || || || | | || ||| |||||||| ||| Sbjct 744818 CCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCA 744877 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || | | | |||| | ||||| | | | ||||| || |||||| | || |||||| Sbjct 744878 TTGAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATAC 744937 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 |||||||| ||||||||||| || || || || || ||| | ||||| | ||||||| | Sbjct 744938 ATTTCAGAATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTC 744997 Query 14561 CATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 || || ||| | ||||| || |||| |||||||| ||||| |||||||| ||| Sbjct 744998 ATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCT 745057 Query 14621 GCAAAAAATGCC--AATATG 14638 ||||| || || |||||| Sbjct 745058 GCAAAGAAAACCAGAATATG 745077 >seq5093 Length=2087638 Score = 132 bits (146), Expect = 5e-26 Identities = 292/431 (68%), Gaps = 10/431 (2%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 528962 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 529021 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||||| ||||||||| || | ||| |||| || || || || |||||| | Sbjct 529022 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAGCAG 529081 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 | | || || ||||||||| | ||||||||| | | | ||||||| Sbjct 529082 GTGCTTTC-TCTAGGGCAAACGCTGCAACACGTTCTCCATGAGTAACGTCTTTGTTCCCA 529140 Query 14384 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| | | || |||| | | || || || | | | |||||||||||| ||||| Sbjct 529141 ATCCA-ATACAAGACCCAAACTGCCTTCTTCTTGA-CACAGGCATTGTTTCAATGGCATT 529198 Query 14443 AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14502 || | | ||| |||| || | |||| ||| |||||||| | |||| || Sbjct 529199 GAAGAGAAACTCC----CTTTGTTATCTTTAATG--TGTGTCAATAAGGAGACTATTTAT 529252 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562 |||| ||||||||||| ||||| || || || ||||| || || | ||||| Sbjct 529253 GTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 529312 Query 14563 TTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622 || | ||| |||| ||| |||| ||||||| ||||| ||||||| ||||| Sbjct 529313 CTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 529372 Query 14623 AAAAAATGCCA 14633 ||| || |||| Sbjct 529373 AAAGAAAGCCA 529383 >seq7904 Length=13651311 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 3487596 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3487655 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || ||||||||||| || || || ||||||||||| | Sbjct 3487656 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 3487715 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||||| || Sbjct 3487716 CTACGACACGTTCACC 3487731 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 3485447 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 3485505 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 3485506 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 3485565 Query 13975 CATAAAATCAAATGGATT 13992 |||||| |||||||| || Sbjct 3485566 CATAAAGTCAAATGGGTT 3485583 Score = 86.0 bits (94), Expect = 6e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 3489772 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 3489831 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 3489832 AAGCCATAGAAACAGCGGGCTTCTG 3489856 >seq7605 Length=1956976 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 132208 AAAAGATG-CATAATGGAACAATAGAATACACAAGTATAGATATGCATAAAGGTGTATCC 132266 |||||||| ||| |||| || || |||| ||| || || ||| || || || || || Sbjct 927606 AAAAGATGTCATGATGGCACTATTGAATTCACGAGCATCGATGCACACAATGGCGTGGCC 927665 Query 132267 CCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTATAATAAAATGGTTAGGTGGT 132326 || || || || || ||||||||||| | || ||||| || || ||||| | ||| Sbjct 927666 CCATCAAGACGTGGTGATTTGGAAATACTTGGTTATTGCATGATCCAATGGCTTACTGGC 927725 Query 132327 AAATTGCCATGGGAAAATGATTTAAAAAATTGTAAATATGTAATGGAGTCAAAGATTAAA 132386 | | || ||||| || |||| ||| || ||||||||| | || || || |||| | Sbjct 927726 CATCTTCCTTGGGAGGATAATTTGAAAGATCCTAAATATGTTAGAGATTCCAAAATTAGA 927785 Query 132387 TACATGAACGATATTGGAAATTTAATG 132413 || | | |||||| || ||| ||| Sbjct 927786 TATAGAGAAAATATTGCAAGTTTGATG 927812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482266471204320