Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq5126 91.5 1e-13
seq2558 91.5 1e-13
seq4805 87.8 1e-12
seq12126 84.2 2e-11
seq7038 84.2 2e-11
seq6459 84.2 2e-11
seq5149 82.4 6e-11
>seq5126
Length=8658521
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || || || || ||||||||||| | || || || ||||
Sbjct 3005832 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 3005773
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || || || ||| |||| || || || || || || | ||||||||||||
Sbjct 3005772 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCT 3005713
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | | |||||| | ||| ||||||| |||||| || | ||||||| |
Sbjct 3005712 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 3005653
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||||| |||| || || || || || ||||||
Sbjct 3005652 TTGCCAGTCAGAGTCTTCACGAAGATCTGCATT 3005620
>seq2558
Length=10987700
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| ||| | || || ||||| || ||||||||||| | | || | | |||||||
Sbjct 486465 ACCAGGTGCGGGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGTGGCCATCTTCC 486406
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
| |||||||| ||| | || || | || || || || | || ||||| || |
Sbjct 486405 AGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 486346
Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295
|||| | || ||||| | ||| |||||||| ||||||| |||| ||||||| ||||
Sbjct 486345 ATTT-TGGCTTTGACGTTCTCAATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTT 486287
Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329
||| || | || ||| ||| || ||||| |||
Sbjct 486286 GCCCGTGAGGGTCTTTGTAAAGATCTGCATGTTT 486253
>seq4805
Length=5228064
Score = 87.8 bits (96), Expect = 1e-12
Identities = 167/245 (68%), Gaps = 2/245 (1%)
Strand=Plus/Minus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || ||||||
Sbjct 4473654 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 4473595
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
|| |||||||| | || || | |||||||| ||| ||||| ||| |||| ||||||
Sbjct 4473594 ATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 4473535
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263
|| ||||| || | ||||||||||| || | ||| || | | | | ||
Sbjct 4473534 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 4473475
Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323
|| ||| || || | ||||||| | || || || | ||||| || ||||| |||
Sbjct 4473474 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 4473415
Query 18324 ATTTT 18328
|||||
Sbjct 4473414 ATTTT 4473410
>seq12126
Length=7615049
Score = 84.2 bits (92), Expect = 2e-11
Identities = 166/245 (68%), Gaps = 2/245 (1%)
Strand=Plus/Minus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || ||||||
Sbjct 7457989 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 7457930
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
|| |||||||| | || || | |||||||| ||| ||||| ||| |||| | ||||
Sbjct 7457929 ATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTT 7457870
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263
|| ||||| || | ||||||||||| || | ||| || | | | | ||
Sbjct 7457869 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 7457810
Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323
|| ||| || || | ||||||| | || || || | ||||| || ||||| |||
Sbjct 7457809 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 7457750
Query 18324 ATTTT 18328
|||||
Sbjct 7457749 ATTTT 7457745
>seq7038
Length=1003649
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || || || || || ||||||||||| | | || | |||||||| ||
Sbjct 394442 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 394501
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| ||| |||| || || || || || ||| | |||||||||||| ||||
Sbjct 394502 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTG 394561
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
||| || | | | | ||||||| |||||| || | ||||||| | |||||||||
Sbjct 394562 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 394621
Query 18303 AATGTTTTTACAAAAATTTGCATT 18326
| || || || || || ||||||
Sbjct 394622 AGGGTCTTCACGAAGATCTGCATT 394645
>seq6459
Length=16685579
Score = 84.2 bits (92), Expect = 2e-11
Identities = 166/245 (68%), Gaps = 2/245 (1%)
Strand=Plus/Minus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || ||||||
Sbjct 968974 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 968915
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
|| |||||||| | || || | |||||||| ||| ||||| ||| |||| | ||||
Sbjct 968914 ATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTT 968855
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263
|| ||||| || | ||||||||||| || | ||| || | | | | ||
Sbjct 968854 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 968795
Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323
|| ||| || || | ||||||| | || || || | ||||| || ||||| |||
Sbjct 968794 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 968735
Query 18324 ATTTT 18328
|||||
Sbjct 968734 ATTTT 968730
>seq5149
Length=2416856
Score = 82.4 bits (90), Expect = 6e-11
Identities = 108/149 (72%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || ||||||
Sbjct 1496100 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 1496159
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
|| |||||||| | || || | |||||||| ||| ||||| ||| |||| ||||||
Sbjct 1496160 ATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 1496219
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232
|| ||||| || | |||||||||||
Sbjct 1496220 TGCTGATCAGGAGGAATTCCTTCCTTATC 1496248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379283324401380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |