Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3971 354 1e-92 seq7904 111 2e-19 seq6727 107 2e-18 seq2336 107 2e-18 seq10904 100 4e-16 seq5016 87.8 2e-12 >seq3971 Length=4903791 Score = 354 bits (392), Expect = 1e-92 Identities = 646/938 (69%), Gaps = 22/938 (2%) Strand=Plus/Plus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 33291 |||| |||||| |||| || | |||| ||| ||| | || |||| |||||||| Sbjct 744299 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 744358 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 | || || || ||| || | ||| ||| | |||| || ||| | ||| ||||| | Sbjct 744359 TCTGATACTCTCCCTTACTCTCTTCTCAAAGA--AGTTCGTCTTTC-AGTGAAATATTCT 744415 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCA 33411 |||| || ||||| || || || || ||| || |||| |||| ||| || Sbjct 744416 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATG- 744474 Query 33412 ATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 33471 ||| ||||| || || || || || ||||| | |||||||| || || | | Sbjct 744475 -TCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 744533 Query 33472 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAA 33531 | || || | ||| |||| || ||||| ||||| || || ||||| | || || Sbjct 744534 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTT 744593 Query 33532 ATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAAT 33591 ||| || | || || ||| |||| | ||||| ||||||| || || |||| Sbjct 744594 CTCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAAT 744653 Query 33592 CGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTA 33651 | ||||| | |||||| ||||| ||||| | ||| || ||||| ||||| || ||||| | Sbjct 744654 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCA 744713 Query 33652 GGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTA 33711 | || || || || ||||| ||||| || || || | || ||||||| | |||||| Sbjct 744714 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTCTG 744770 Query 33712 CTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTT 33768 ||||||||||| | | || | || ||||| | | | |||| ||||| | Sbjct 744771 CTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGCA 744830 Query 33769 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33828 |||||||| |||||||| || ||||||||||||||||| |||||||| | |||| | | Sbjct 744831 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGAAATT 744890 Query 33829 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33888 |||| || |||||| | ||||| || || | |||||||||||| ||||| | Sbjct 744891 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACATTTCAGAATGTA 744950 Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 33948 ||||||| ||||| || || || || ||||||| | || || || ||||| |||||| Sbjct 744951 TGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTT 745010 Query 33949 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 | |||||| || | || |||||||| ||||| |||||||| |||||||| || ||| Sbjct 745011 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 745070 Query 34009 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----ATA 34064 | ||| |||||||| | | || || || | || ||||| || || | Sbjct 745071 GAATATGAGATATAAAATCTCTCTCCTCGGGCTTCAG-GGATTCC---CAGTGCCAAACG 745126 Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 34124 || || || | ||||| || || | ||||| || || || || ||||| |||||||| Sbjct 745127 TCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 745186 Query 34125 TTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | |||||| ||||| || | ||| ||||| || ||||| Sbjct 745187 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 745224 >seq7904 Length=13651311 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || ||||| ||||| || ||||| || || || || | Sbjct 3487596 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3487655 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||| Sbjct 3487656 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 3487715 Query 33724 C 33724 | Sbjct 3487716 C 3487716 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 3489765 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3489824 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 3489825 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 3489884 >seq6727 Length=1359887 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | Sbjct 309609 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 309668 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 309669 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 309728 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 309729 CTGTTTCTTATACCATA 309745 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| |||| || || || || | ||| || || || | || || | Sbjct 315527 CATAGGTTTCATATGGGCCTTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCGCCAT 315586 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||||| |||||| || ||| ||||| | || ||||| || | Sbjct 315587 AATAAATAGTTTCAAAGATCTGCTTATTCAGTAATTGGGCTTCTGCACTCTCAAAAGGGT 315646 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | || ||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 315647 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGAC 315706 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 315707 GTTTATTTGA 315716 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| ||||||||||||||||||||||| | || |||||||| | | Sbjct 321318 CTCCACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 321377 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 321378 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 321437 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 321438 AGGCTCCAGGTAAATAGC 321455 >seq2336 Length=9258750 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | ||| || Sbjct 5792327 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 5792268 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 5792267 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 5792209 >seq10904 Length=13273130 Score = 100 bits (110), Expect = 4e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 188376 TCGGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATC 188435 |||||||| | || |||||||| |||||||||||| |||||||||| ||||||| || | Sbjct 2596899 TCGGATCTCTGGGTTTGATTTTTGCATTGACTTTAAACAGACATAAGTATCCCCTTAACC 2596840 Query 188436 TGTACCTACTTTGTGGATTT 188455 |||||||||||| ||||||| Sbjct 2596839 TGTACCTACTTTTTGGATTT 2596820 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| || | ||||||||||| |||||||| |||| ||| Sbjct 2590461 GTTACTTTCTATGATGTATATATTATTCTGCAAGCTTTCATACTGACTACTACAGTATTT 2590402 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTG 188600 ||| | ||||| | |||||||||||| ||||| |||||||| ||| ||| Sbjct 2590401 TTTGGTTTGACTGTGTATACTCTACAATCTAAGAGGGATTTCAGCAAATTTG 2590350 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||| |||||||||||||||||||||| |||| ||||| || |||||||||||| Sbjct 2613911 TGCTCCTCGATCGAGGACGACTTCAACTATGGCAGCAGCGTGGCCTCCGCCAGCGTGCAC 2613852 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 2613851 ATCCGAATGG 2613842 >seq5016 Length=4328724 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/257 (68%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 31299 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 31356 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| | |||| Sbjct 108976 TCCAGTAGAACCAAAACCTCCTGAACCCCTTTCGGTGTC--ATCCAAAGCTTGAATTTCT 108919 Query 31357 TCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31416 || | |||||||||| | || | || | || ||||| || ||| ||| || | || Sbjct 108918 TCTATTTCTGGATAAAAAATCCATTCGCAAATGAGCTGTGCAGTTCAATCACCCTTTTTG 108859 Query 31417 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31476 || | |||| | ||| ||| |||| || | || || | ||||| ||||||||| Sbjct 108858 ACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCT 108799 Query 31477 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31533 || ||||| ||||| |||||| |||||| | |||| | || || |||| ||| Sbjct 108798 TCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCATGGA 108739 Query 31534 GCTATTCTACCATAGCA 31550 |||| ||| ||||| || Sbjct 108738 GCTACTCTTCCATAACA 108722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629714278422720