Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3971 246 3e-60 seq5093 143 2e-29 seq2336 114 1e-20 seq6727 96.9 3e-15 >seq3971 Length=4903791 Score = 246 bits (272), Expect = 3e-60 Identities = 612/917 (67%), Gaps = 33/917 (4%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCAC--TAACTCGTCGT-TC 11364 ||||||| | | ||| | ||| |||||| | ||||| || | | |||| || | || Sbjct 744327 ATTCTCTGTTGGACTTGACACCACTCCCATCCTCTGATACTCTCCCTTACTC-TCTTCTC 744385 Query 11365 GAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATAC 11424 || || || ||||| | ||||| |||| |||||||||| ||| || || | ||| Sbjct 744386 AAAGAAGTTCGTCTTTC-----AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTAC 744440 Query 11425 ATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATA 11484 |||| || || | |||| | || | ||| ||||| || || || || | Sbjct 744441 TCTGAAAACCTTGCTAAAACCCAGTTCCAGCATG--TCTGTCTGCCACAAACTCAATGCA 744498 Query 11485 CTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAA 11544 || ||||| | |||||||| || ||| | | ||| || | || | || | || Sbjct 744499 TTGCTTCATTAGAGTGCAATTCATCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAA 744558 Query 11545 CTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGG 11604 |||| |||||| ||| |||| || ||||| ||| |||| |||| Sbjct 744559 TTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTACTCTCTCCTCCAGTGGTTT 744618 Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 |||| | ||||| ||||| | || ||||||||||| |||||||| || ||||| || Sbjct 744619 GTGTACCAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCT 744678 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 || |||||||| |||||||| | || ||||||| ||||||||| || | ||| ||||| Sbjct 744679 AATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATAT 744738 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 | ||||| ||||||||||| || || || | || ||||| |||| || | ||| Sbjct 744739 CGATGCAAAATAACCAGAAAAG---ATGCCTTCTGCTGCAGCAAAGACTACAACACGTTC 744795 Query 11785 TCCATA--TACCTT-GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841 ||||| || ||| ||| ||||| | ||||||||| || ||||| || || Sbjct 744796 ACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGAC 744855 Query 11842 GCATTCCATTGTTTCTATAGCGTTAA--ATAAATGCATTTTTTCTATATTATCTCTTACA 11899 || ||| ||||| || || || | | |||| | ||||| | |||| ||| Sbjct 744856 ACAAGGCATCGTTTCAATGGCATTGAGGAGAAATTC--CCTTTCTTTGGGATCTTTTATG 744913 Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || || || |||||||||||||| ||||| || ||||| || || ||||| || Sbjct 744914 TAAGTGTCAATACGGAAACTATACATTTCAGAATGTATGTTTTCTATGGCAATTTGGAAG 744973 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||| ||||||| || || |||| ||| || || ||||| ||| | || || Sbjct 744974 CCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTT 745033 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079 |||||||| || |||||||| | |||||| || | || ||||| |||||| | | | Sbjct 745034 TCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAATATGAGATATAAAATCTCTC 745093 Query 12080 TC----GTCTTTAGTTAATTTATCCCAATCATCTAAA--TCTTTTGATAAATCTACTTCT 12133 || | ||| || | ||||| | | ||| || || || | || || || Sbjct 745094 TCCTCGGGCTTCAGGGA----TTCCCAGT--GCCAAACGTCCTTGGACAGGTCCACCTCC 745147 Query 12134 TCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTA 12193 || ||||||| || || | | | |||||||| | |||||||||||| |||| Sbjct 745148 TCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCG 745207 Query 12194 ATAGGGAAAATAACGAA 12210 || ||||| || || || Sbjct 745208 ATGGGGAAGATGACAAA 745224 >seq5093 Length=2087638 Score = 143 bits (158), Expect = 2e-29 Identities = 313/461 (68%), Gaps = 17/461 (4%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || || |||||||| |||||||| | Sbjct 528962 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 529021 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| ||||||||| || | ||| |||| ||||| |||||||||||| | Sbjct 529022 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAGCAG 529081 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803 | | || || ||||| ||| | || | |||||||| || | ||||| | | Sbjct 529082 GTGCTTTCTCTAG-GGCAAACGCTGCAACACGTTCTCCATGAGTAACGTCTTTGTTCCCA 529140 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| | | ||||| | || ||||| || || || ||||||||| || || Sbjct 529141 ---ATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCA 529196 Query 11864 TTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923 || || | | | | || | |||||| ||| || ||| || || | | ||||| Sbjct 529197 TTGAAGAGAAAC----TCCCTTTGTTATCT-TTA-ATGTGTGTCAATAAGGAGACTATTT 529250 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983 || || | ||| || ||||| ||||| ||||| || |||||||| || | |||| | Sbjct 529251 ATGTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTA 529310 Query 11984 CACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGAT 12043 ||| | || | |||| |||| | || || |||| ||| || ||||||| | | Sbjct 529311 ATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCT 529370 Query 12044 GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 ||||| || || || ||| |||||| ||| |||| || Sbjct 529371 GCAAAGAAAGCCAGAATACAGGATATAAAATATCTTTCCTC 529411 >seq2336 Length=9258750 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 5792329 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 5792270 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 5792269 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 5792210 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 5792209 CCACCACTCTTTCCCC 5792194 >seq6727 Length=1359887 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| |||||||| || || ||||||||| Sbjct 309609 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 309668 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 309669 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 309728 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 309729 CTGTTTCTTATACCAT 309744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468447938506560