Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq3971 246 3e-60
seq5093 143 2e-29
seq2336 114 1e-20
seq6727 96.9 3e-15
>seq3971
Length=4903791
Score = 246 bits (272), Expect = 3e-60
Identities = 612/917 (67%), Gaps = 33/917 (4%)
Strand=Plus/Plus
Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCAC--TAACTCGTCGT-TC 11364
||||||| | | ||| | ||| |||||| | ||||| || | | |||| || | ||
Sbjct 744327 ATTCTCTGTTGGACTTGACACCACTCCCATCCTCTGATACTCTCCCTTACTC-TCTTCTC 744385
Query 11365 GAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATAC 11424
|| || || ||||| | ||||| |||| |||||||||| ||| || || | |||
Sbjct 744386 AAAGAAGTTCGTCTTTC-----AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTAC 744440
Query 11425 ATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATA 11484
|||| || || | |||| | || | ||| ||||| || || || || |
Sbjct 744441 TCTGAAAACCTTGCTAAAACCCAGTTCCAGCATG--TCTGTCTGCCACAAACTCAATGCA 744498
Query 11485 CTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAA 11544
|| ||||| | |||||||| || ||| | | ||| || | || | || | ||
Sbjct 744499 TTGCTTCATTAGAGTGCAATTCATCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAA 744558
Query 11545 CTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGG 11604
|||| |||||| ||| |||| || ||||| ||| |||| ||||
Sbjct 744559 TTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTACTCTCTCCTCCAGTGGTTT 744618
Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664
|||| | ||||| ||||| | || ||||||||||| |||||||| || ||||| ||
Sbjct 744619 GTGTACCAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCT 744678
Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724
|| |||||||| |||||||| | || ||||||| ||||||||| || | ||| |||||
Sbjct 744679 AATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATAT 744738
Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784
| ||||| ||||||||||| || || || | || ||||| |||| || | |||
Sbjct 744739 CGATGCAAAATAACCAGAAAAG---ATGCCTTCTGCTGCAGCAAAGACTACAACACGTTC 744795
Query 11785 TCCATA--TACCTT-GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841
||||| || ||| ||| ||||| | ||||||||| || ||||| || ||
Sbjct 744796 ACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGAC 744855
Query 11842 GCATTCCATTGTTTCTATAGCGTTAA--ATAAATGCATTTTTTCTATATTATCTCTTACA 11899
|| ||| ||||| || || || | | |||| | ||||| | |||| |||
Sbjct 744856 ACAAGGCATCGTTTCAATGGCATTGAGGAGAAATTC--CCTTTCTTTGGGATCTTTTATG 744913
Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959
|| || || || |||||||||||||| ||||| || ||||| || || ||||| ||
Sbjct 744914 TAAGTGTCAATACGGAAACTATACATTTCAGAATGTATGTTTTCTATGGCAATTTGGAAG 744973
Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019
||| ||||||| || || |||| ||| || || ||||| ||| | || ||
Sbjct 744974 CCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTT 745033
Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079
|||||||| || |||||||| | |||||| || | || ||||| |||||| | | |
Sbjct 745034 TCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAATATGAGATATAAAATCTCTC 745093
Query 12080 TC----GTCTTTAGTTAATTTATCCCAATCATCTAAA--TCTTTTGATAAATCTACTTCT 12133
|| | ||| || | ||||| | | ||| || || || | || || ||
Sbjct 745094 TCCTCGGGCTTCAGGGA----TTCCCAGT--GCCAAACGTCCTTGGACAGGTCCACCTCC 745147
Query 12134 TCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTA 12193
|| ||||||| || || | | | |||||||| | |||||||||||| ||||
Sbjct 745148 TCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCG 745207
Query 12194 ATAGGGAAAATAACGAA 12210
|| ||||| || || ||
Sbjct 745208 ATGGGGAAGATGACAAA 745224
>seq5093
Length=2087638
Score = 143 bits (158), Expect = 2e-29
Identities = 313/461 (68%), Gaps = 17/461 (4%)
Strand=Plus/Plus
Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689
|| ||||| | ||| |||||||| || || || || || |||||||| |||||||| |
Sbjct 528962 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 529021
Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749
|| ||||||| ||||||||| || | ||| |||| ||||| |||||||||||| |
Sbjct 529022 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAGCAG 529081
Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803
| | || || ||||| ||| | || | |||||||| || | ||||| | |
Sbjct 529082 GTGCTTTCTCTAG-GGCAAACGCTGCAACACGTTCTCCATGAGTAACGTCTTTGTTCCCA 529140
Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863
||||| | | ||||| | || ||||| || || || ||||||||| || ||
Sbjct 529141 ---ATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCA 529196
Query 11864 TTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923
|| || | | | | || | |||||| ||| || ||| || || | | |||||
Sbjct 529197 TTGAAGAGAAAC----TCCCTTTGTTATCT-TTA-ATGTGTGTCAATAAGGAGACTATTT 529250
Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983
|| || | ||| || ||||| ||||| ||||| || |||||||| || | |||| |
Sbjct 529251 ATGTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTA 529310
Query 11984 CACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGAT 12043
||| | || | |||| |||| | || || |||| ||| || ||||||| | |
Sbjct 529311 ATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCT 529370
Query 12044 GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084
||||| || || || ||| |||||| ||| |||| ||
Sbjct 529371 GCAAAGAAAGCCAGAATACAGGATATAAAATATCTTTCCTC 529411
>seq2336
Length=9258750
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || |
Sbjct 5792329 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 5792270
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| |
Sbjct 5792269 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 5792210
Query 11772 CTACTACTCTTTCTCC 11787
| || |||||||| ||
Sbjct 5792209 CCACCACTCTTTCCCC 5792194
>seq6727
Length=1359887
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | ||||| |||||||| || || |||||||||
Sbjct 309609 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 309668
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || || |||||||| || || || || |
Sbjct 309669 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 309728
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 309729 CTGTTTCTTATACCAT 309744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468447938506560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |