Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3971 318 8e-82 seq10904 170 3e-37 seq6727 113 6e-20 seq2336 111 2e-19 seq7904 104 3e-17 >seq3971 Length=4903791 Score = 318 bits (352), Expect = 8e-82 Identities = 638/938 (68%), Gaps = 22/938 (2%) Strand=Plus/Plus Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 35867 |||| || ||| |||| | | |||| ||| ||| | || |||| |||||||| Sbjct 744299 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 744358 Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927 | || || || ||| || | ||| ||| | |||| | ||| | ||| ||||| | Sbjct 744359 TCTGATACTCTCCCTTACTCTCTTCTCAAAGA--AGTTCGTCTTTC-AGTGAAATATTCT 744415 Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987 |||| || || ||||| || || | ||| || |||| |||| ||| || Sbjct 744416 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATG- 744474 Query 35988 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 36047 ||| ||||| ||||| || || || ||||| | |||||||| || ||| | | Sbjct 744475 -TCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 744533 Query 36048 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 36107 | || || | ||| |||| || ||||| ||||| || || || | | || || Sbjct 744534 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTT 744593 Query 36108 ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 36167 | ||||| | || || ||| | | | ||||| ||||||| || || |||| Sbjct 744594 CTCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAAT 744653 Query 36168 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 36227 | ||||||| |||||| ||||| ||||| | ||| |||||||| ||||| || ||||| | Sbjct 744654 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCA 744713 Query 36228 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 36287 | || || || || ||||| ||||| || ||||| | |||||||||| | |||||| Sbjct 744714 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCTG 744770 Query 36288 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTT 36344 |||| |||||| | | || | || ||||| | | | |||| ||||| | Sbjct 744771 CTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGCA 744830 Query 36345 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 36404 |||||||| |||||||| || ||||||||||| || || || ||||| | |||| | | Sbjct 744831 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGAAATT 744890 Query 36405 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 36464 |||| || |||||| | || || ||||| | |||||||||||| ||||| | Sbjct 744891 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACATTTCAGAATGTA 744950 Query 36465 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 36524 ||||||| ||||| ||||| || || ||||||| | || || || ||||| |||||| Sbjct 744951 TGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTT 745010 Query 36525 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 36584 | |||||| || | || |||||||| ||||| || ||||| |||||||| || ||| Sbjct 745011 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 745070 Query 36585 ATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG----ATA 36640 | ||| |||||||| | | || | || | || ||||| || || | Sbjct 745071 GAATATGAGATATAAAATCTCTCTCCTCGGGCTTCAG-GGATTCC---CAGTGCCAAACG 745126 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 || || || | ||||| || || | ||||| || || || || ||||| |||||||| Sbjct 745127 TCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 745186 Query 36701 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 | |||||| ||||| || | || || || || ||||| Sbjct 745187 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 745224 >seq10904 Length=13273130 Score = 170 bits (188), Expect = 3e-37 Identities = 167/215 (78%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 9218 TTTTAAACTTTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATT 9277 |||||| ||| || |||||| | |||||| || | ||||||| |||| ||| ||||| Sbjct 2582202 TTTTAA---TTACTTTTTATTAACTGCTTCCAGAAACCGTAACAGGTGCAGGAATAGATT 2582258 Query 9278 GATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATG 9337 ||||||||||||||||| |||| | ||||| || || |||||||| || || ||||| Sbjct 2582259 GATGATATCCAAGTAGAGGCTGATGGCAGCTAATACGTACTCTTCAGGTGATAGTTTATG 2582318 Query 9338 TATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGA 9397 || |||||||| ||||||||||| |||||||| ||||| | |||||| || ||||| Sbjct 2582319 CATCAGTGAGTGTGTGTCATAGATGATGAATCCACAGAAAAGAAGGGCTCCTGCAGCAGC 2582378 Query 9398 CAGGACCAGCTCCACTGTTTCACTTTGCACAAATA 9432 | ||||| ||||| ||| ||| | | | ||||| Sbjct 2582379 TAAGACCAACTCCATTGTCTCATTATAAAAAAATA 2582413 Score = 129 bits (142), Expect = 8e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || ||||||| ||| |||||||| ||||| |||||||||||||| |||||| | ||| | Sbjct 2590343 CCAGCTCCAAATTTGCTGAAATCCCTCTTAGATTGTAGAGTATACACAGTCAAACCAAAA 2590402 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||| ||||||||| ||||||||||||| || | || ||||||||||||||||| Sbjct 2590403 AATACTGTAGTAGTCAGTATGAAAGCTTGCAGAATAATATATACATCATAGAAAGTAAC 2590461 Score = 93.3 bits (102), Expect = 6e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||| Sbjct 2613842 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCTGCTGCCATAGTTGAAGTCGTCCTCGA 2613901 Query 9907 TGGAGGAGCACGCGTA 9922 | |||||||| | ||| Sbjct 2613902 TCGAGGAGCAAGGGTA 2613917 >seq6727 Length=1359887 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | Sbjct 309609 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 309668 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 309669 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 309728 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 309729 CTGTTTCTTATACCATA 309745 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| ||||||||||||||||||||||| | || | |||||||| | Sbjct 321318 CTCCACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 321377 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 321378 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 321437 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 321438 AGGCTCCAGGTAAATAGC 321455 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 338137 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 338196 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 338197 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 338256 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 338257 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 338302 >seq2336 Length=9258750 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 5792327 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 5792268 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 5792267 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 5792209 >seq7904 Length=13651311 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 3489765 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3489824 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||| || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 3489825 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 3489884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658064826752160