Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq3971 318 8e-82
seq10904 170 3e-37
seq6727 113 6e-20
seq2336 111 2e-19
seq7904 104 3e-17
>seq3971
Length=4903791
Score = 318 bits (352), Expect = 8e-82
Identities = 638/938 (68%), Gaps = 22/938 (2%)
Strand=Plus/Plus
Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 35867
|||| || ||| |||| | | |||| ||| ||| | || |||| ||||||||
Sbjct 744299 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 744358
Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927
| || || || ||| || | ||| ||| | |||| | ||| | ||| ||||| |
Sbjct 744359 TCTGATACTCTCCCTTACTCTCTTCTCAAAGA--AGTTCGTCTTTC-AGTGAAATATTCT 744415
Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987
|||| || || ||||| || || | ||| || |||| |||| ||| ||
Sbjct 744416 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATG- 744474
Query 35988 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 36047
||| ||||| ||||| || || || ||||| | |||||||| || ||| | |
Sbjct 744475 -TCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 744533
Query 36048 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 36107
| || || | ||| |||| || ||||| ||||| || || || | | || ||
Sbjct 744534 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTT 744593
Query 36108 ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 36167
| ||||| | || || ||| | | | ||||| ||||||| || || ||||
Sbjct 744594 CTCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAAT 744653
Query 36168 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 36227
| ||||||| |||||| ||||| ||||| | ||| |||||||| ||||| || ||||| |
Sbjct 744654 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCA 744713
Query 36228 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 36287
| || || || || ||||| ||||| || ||||| | |||||||||| | ||||||
Sbjct 744714 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCTG 744770
Query 36288 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTT 36344
|||| |||||| | | || | || ||||| | | | |||| ||||| |
Sbjct 744771 CTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGCA 744830
Query 36345 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 36404
|||||||| |||||||| || ||||||||||| || || || ||||| | |||| | |
Sbjct 744831 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGAAATT 744890
Query 36405 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 36464
|||| || |||||| | || || ||||| | |||||||||||| ||||| |
Sbjct 744891 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACATTTCAGAATGTA 744950
Query 36465 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 36524
||||||| ||||| ||||| || || ||||||| | || || || ||||| ||||||
Sbjct 744951 TGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTT 745010
Query 36525 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 36584
| |||||| || | || |||||||| ||||| || ||||| |||||||| || |||
Sbjct 745011 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 745070
Query 36585 ATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG----ATA 36640
| ||| |||||||| | | || | || | || ||||| || || |
Sbjct 745071 GAATATGAGATATAAAATCTCTCTCCTCGGGCTTCAG-GGATTCC---CAGTGCCAAACG 745126
Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700
|| || || | ||||| || || | ||||| || || || || ||||| ||||||||
Sbjct 745127 TCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 745186
Query 36701 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738
| |||||| ||||| || | || || || || |||||
Sbjct 745187 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 745224
>seq10904
Length=13273130
Score = 170 bits (188), Expect = 3e-37
Identities = 167/215 (78%), Gaps = 3/215 (1%)
Strand=Plus/Plus
Query 9218 TTTTAAACTTTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATT 9277
|||||| ||| || |||||| | |||||| || | ||||||| |||| ||| |||||
Sbjct 2582202 TTTTAA---TTACTTTTTATTAACTGCTTCCAGAAACCGTAACAGGTGCAGGAATAGATT 2582258
Query 9278 GATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATG 9337
||||||||||||||||| |||| | ||||| || || |||||||| || || |||||
Sbjct 2582259 GATGATATCCAAGTAGAGGCTGATGGCAGCTAATACGTACTCTTCAGGTGATAGTTTATG 2582318
Query 9338 TATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGA 9397
|| |||||||| ||||||||||| |||||||| ||||| | |||||| || |||||
Sbjct 2582319 CATCAGTGAGTGTGTGTCATAGATGATGAATCCACAGAAAAGAAGGGCTCCTGCAGCAGC 2582378
Query 9398 CAGGACCAGCTCCACTGTTTCACTTTGCACAAATA 9432
| ||||| ||||| ||| ||| | | | |||||
Sbjct 2582379 TAAGACCAACTCCATTGTCTCATTATAAAAAAATA 2582413
Score = 129 bits (142), Expect = 8e-25
Identities = 100/119 (84%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|| ||||||| ||| |||||||| ||||| |||||||||||||| |||||| | ||| |
Sbjct 2590343 CCAGCTCCAAATTTGCTGAAATCCCTCTTAGATTGTAGAGTATACACAGTCAAACCAAAA 2590402
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| |||| ||||||||| ||||||||||||| || | || |||||||||||||||||
Sbjct 2590403 AATACTGTAGTAGTCAGTATGAAAGCTTGCAGAATAATATATACATCATAGAAAGTAAC 2590461
Score = 93.3 bits (102), Expect = 6e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||
Sbjct 2613842 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCTGCTGCCATAGTTGAAGTCGTCCTCGA 2613901
Query 9907 TGGAGGAGCACGCGTA 9922
| |||||||| | |||
Sbjct 2613902 TCGAGGAGCAAGGGTA 2613917
>seq6727
Length=1359887
Score = 113 bits (124), Expect = 6e-20
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| |
Sbjct 309609 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 309668
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
||||||||||| |||| || |||||||| || || || ||||| || || | | ||||
Sbjct 309669 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 309728
Query 65301 CTATTTCTAAGACCGTA 65317
|| ||||| | ||| ||
Sbjct 309729 CTGTTTCTTATACCATA 309745
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||| ||||| ||||||||||||||||||||||| | || | |||||||| |
Sbjct 321318 CTCCACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 321377
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
|| || || |||||||| ||||| || | ||| ||||| | | || || |||||||
Sbjct 321378 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 321437
Query 66176 CGGTTCCAAGTATATGGC 66193
|| |||| ||| || ||
Sbjct 321438 AGGCTCCAGGTAAATAGC 321455
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| || | ||| |||||||||||||| | || || || || || || || || | |
Sbjct 338137 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 338196
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
| ||||| || || || | ||||| | || || ||| |||| || |||| ||| || |
Sbjct 338197 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 338256
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || || || || ||| | || | |||||||| || |||||
Sbjct 338257 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 338302
>seq2336
Length=9258750
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|| ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| ||
Sbjct 5792327 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 5792268
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300
||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 5792267 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 5792209
>seq7904
Length=13651311
Score = 104 bits (114), Expect = 3e-17
Identities = 95/120 (79%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||| | || || ||||| | ||||||||||||||| ||||| |||||||| |||||
Sbjct 3489765 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3489824
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537
||||| || || |||||||| | || || |||||||| |||||| | |||||| ||
Sbjct 3489825 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 3489884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658064826752160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |