Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq6472 163 2e-35
seq7015 143 2e-29
seq2002 84.2 2e-11
seq10748 82.4 7e-11
>seq6472
Length=2227648
Score = 163 bits (180), Expect = 2e-35
Identities = 149/188 (79%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972
||||||| ||| || || | ||| || ||||| || || || ||||| |||||
Sbjct 2219994 AGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTGTGT 2219935
Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032
|||||||| || || |||||||||||| ||| || |||| ||||| || |||||||||
Sbjct 2219934 ACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAG 2219875
Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092
||||||||||| || || || || ||||||||||| | || ||||||||||||||||||
Sbjct 2219874 CTGGCGATGTTGAAAGGCACGCCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAG 2219815
Query 21093 GACAGCTC 21100
||||||||
Sbjct 2219814 GACAGCTC 2219807
>seq7015
Length=9623085
Score = 143 bits (158), Expect = 2e-29
Identities = 130/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
|||||||||||| ||| || |||| ||||| || |||||||||||||||||||| || |
Sbjct 2250481 TCAGGCCCGTGATGTGCGCAATCATGTACGTGAGTAGGGCGTAGCTGGCGATGTTGAAAG 2250422
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | || |||||||||||||||||||||||||| |
Sbjct 2250421 GCACGCCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCA 2250362
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152
|||| || ||||| || | |||| || ||||| || ||||||
Sbjct 2250361 CCACATAGAACTGGCAGAGGGCGTGGCATGGAGGCAGTGCCATC 2250318
>seq2002
Length=7965521
Score = 84.2 bits (92), Expect = 2e-11
Identities = 122/170 (72%), Gaps = 2/170 (1%)
Strand=Plus/Minus
Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082
|||||||| | || | ||||||||||||| | |||||| || || ||||| | |||
Sbjct 4007124 TCTCTGCTGAGAACTAAATTAATTCTGTTCTTTAAAGGGCGATTTTTCTCAGGAAGGGAG 4007065
Query 3083 AACCATGTTCTT-TTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141
||||| | |||| | |||||||| |||| ||||| || |||| | | || | || |
Sbjct 4007064 AACCA-GATCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTGCTGAAGAGGTTGT 4007006
Query 3142 CGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191
|||||| |||| |||||| | | || || || || |||| | ||||
Sbjct 4007005 GGTCATTCTCTGGAAATACCTGAACTCATTCCTGAGCGGCGGCTAGGGCA 4006956
>seq10748
Length=70664
Score = 82.4 bits (90), Expect = 7e-11
Identities = 188/276 (68%), Gaps = 8/276 (3%)
Strand=Plus/Plus
Query 2971 ATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCT 3030
||| || || |||| || ||| | || ||||| || || ||| | | ||||||||
Sbjct 7720 ATCATCCAGACTTCTGGCAAGAGAATGAGCTCCTTGTGGAGGTCCCTTGAGTTCTCTGCC 7779
Query 3031 CAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGT 3090
| || | ||||||||| | | | ||| || ||||| ||||| ||||| ||||| |
Sbjct 7780 GAGAACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCA-GA 7838
Query 3091 TCTTT-TCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTT 3149
|||| | | ||||| | ||| ||||| || |||| | | || | || ||||||
Sbjct 7839 TCTTCCTACACATAACA-CCAGATTCTGTTTACCTTCTAGTGAAGA-GTCTGTGTCATTC 7896
Query 3150 TCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTTTACCAA 3209
|||| |||||| | | ||| || || || || ||| |||| ||||| || ||||
Sbjct 7897 TCTGGAAATACCTAAATTCATTCCTGAGTGGCGACCAGGGCAGGTGCCCGTTCTTGCCAA 7956
Query 3210 TTCCTAATTGTTC--ATCAACTGCAACGATGCAGTT 3243
| || | ||||| | || || |||||||||||
Sbjct 7957 TGCCCA--TGTTCTGAGGCACAGCGACGATGCAGTT 7990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427707577763520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |