Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq6472 163 2e-35 seq7015 143 2e-29 seq2002 84.2 2e-11 seq10748 82.4 7e-11 >seq6472 Length=2227648 Score = 163 bits (180), Expect = 2e-35 Identities = 149/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||||| ||| || || | ||| || ||||| || || || ||||| ||||| Sbjct 2219994 AGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTGTGT 2219935 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 |||||||| || || |||||||||||| ||| || |||| ||||| || ||||||||| Sbjct 2219934 ACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAG 2219875 Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||||||||| || || || || ||||||||||| | || |||||||||||||||||| Sbjct 2219874 CTGGCGATGTTGAAAGGCACGCCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAG 2219815 Query 21093 GACAGCTC 21100 |||||||| Sbjct 2219814 GACAGCTC 2219807 >seq7015 Length=9623085 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| || |||| ||||| || |||||||||||||||||||| || | Sbjct 2250481 TCAGGCCCGTGATGTGCGCAATCATGTACGTGAGTAGGGCGTAGCTGGCGATGTTGAAAG 2250422 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | || |||||||||||||||||||||||||| | Sbjct 2250421 GCACGCCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCA 2250362 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | |||| || ||||| || |||||| Sbjct 2250361 CCACATAGAACTGGCAGAGGGCGTGGCATGGAGGCAGTGCCATC 2250318 >seq2002 Length=7965521 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || | ||||||||||||| | |||||| || || ||||| | ||| Sbjct 4007124 TCTCTGCTGAGAACTAAATTAATTCTGTTCTTTAAAGGGCGATTTTTCTCAGGAAGGGAG 4007065 Query 3083 AACCATGTTCTT-TTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141 ||||| | |||| | |||||||| |||| ||||| || |||| | | || | || | Sbjct 4007064 AACCA-GATCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTGCTGAAGAGGTTGT 4007006 Query 3142 CGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| |||| |||||| | | || || || || |||| | |||| Sbjct 4007005 GGTCATTCTCTGGAAATACCTGAACTCATTCCTGAGCGGCGGCTAGGGCA 4006956 >seq10748 Length=70664 Score = 82.4 bits (90), Expect = 7e-11 Identities = 188/276 (68%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 2971 ATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCT 3030 ||| || || |||| || ||| | || ||||| || || ||| | | |||||||| Sbjct 7720 ATCATCCAGACTTCTGGCAAGAGAATGAGCTCCTTGTGGAGGTCCCTTGAGTTCTCTGCC 7779 Query 3031 CAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGT 3090 | || | ||||||||| | | | ||| || ||||| ||||| ||||| ||||| | Sbjct 7780 GAGAACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCA-GA 7838 Query 3091 TCTTT-TCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTT 3149 |||| | | ||||| | ||| ||||| || |||| | | || | || |||||| Sbjct 7839 TCTTCCTACACATAACA-CCAGATTCTGTTTACCTTCTAGTGAAGA-GTCTGTGTCATTC 7896 Query 3150 TCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTTTACCAA 3209 |||| |||||| | | ||| || || || || ||| |||| ||||| || |||| Sbjct 7897 TCTGGAAATACCTAAATTCATTCCTGAGTGGCGACCAGGGCAGGTGCCCGTTCTTGCCAA 7956 Query 3210 TTCCTAATTGTTC--ATCAACTGCAACGATGCAGTT 3243 | || | ||||| | || || ||||||||||| Sbjct 7957 TGCCCA--TGTTCTGAGGCACAGCGACGATGCAGTT 7990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427707577763520