Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq3971 122 6e-23 >seq3971 Length=4903791 Score = 122 bits (134), Expect = 6e-23 Identities = 394/596 (66%), Gaps = 42/596 (7%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| |||||||| | || || || ||||||| ||||||||||| || | || Sbjct 745185 ATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGGAC 745126 Query 22405 GTACGCCATTGGACAGAAAAACTGA---CCGAGGCTGAGCGCAGGTTCATGTCTCACATA 22461 || | || ||| ||| |||| |||||| ||| | || || ||||| || Sbjct 745125 GTTTGGCACTGG---GAATCCCTGAAGCCCGAGGA-GAGAGAT--TTTATATCTCATATT 745072 Query 22462 CTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTT 22517 |||| ||||||||| ||| |||||||| ||| || ||| | ||| || |||| Sbjct 745071 CTGGTTTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTT 745015 Query 22518 CGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAAT 22577 || || ||| || | || |||||||| | ||||| ||| || || | || || Sbjct 745014 AGCCAA-GAAGTTCAG---ATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCAT 744959 Query 22578 GGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG-- 22635 ||||| |||||| |||||||||||| | | ||| ||| | || ||||| Sbjct 744958 AGAAAACATACATTCTGAAATGTATAGTTTCCGTATTGACACTTACATA---AAAGATCC 744902 Query 22636 --AATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGC 22691 || ||| || | ||| || |||| ||||| ||||| || ||||| Sbjct 744901 CAAAGAAAGGGAATTTCTCCTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGC 744842 Query 22692 ACAGTGGGC--TGCACAATGGCTGAATGCCACACATAAGT---CTATCGCAACACGTCTC 22746 | | ||||| ||||| ||| | | ||| | ||| |||| | | |||| | Sbjct 744841 AGATTGGGCCTTGCAC--TGGATTGGGG--ACAAAGAAGCTACCTATGGTGA-ACGTGTT 744787 Query 22747 TTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGG 22806 | | |||||| || | |||||| || |||||||| | ||||| | ||||||||| Sbjct 744786 GTAGTCTTTGCTGCAGCAGAAGGCATC---TTTTCTGGTTATTTTGCATCGATATTCTGG 744730 Query 22807 CTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGAC 22866 || |||||||| || ||||| || | | |||||||| || | |||||| | || Sbjct 744729 CTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAT 744670 Query 22867 GAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 || ||| |||||||||| |||||||| || |||| | || ||| | ||||||| Sbjct 744669 GAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTGGTACACAAACC 744614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356176620880972