Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3971 266 3e-66 seq5093 141 9e-29 seq7904 120 3e-22 >seq3971 Length=4903791 Score = 266 bits (294), Expect = 3e-66 Identities = 508/742 (68%), Gaps = 20/742 (3%) Strand=Plus/Plus Query 13572 ACGCCCATTTTTTGATATTCAC--TAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCA 13629 || ||||| | ||||| || | | ||||| || ||||||||||| || ||| || Sbjct 744349 ACTCCCATCCTCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCA 744403 Query 13630 GTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTA 13689 |||| ||||| |||||||| |||||||| || | | || || || | |||| | Sbjct 744404 GTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCA 744463 Query 13690 GTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCA 13749 |||| | | ||| || || | ||||||||| |||| ||||| | ||||||| Sbjct 744464 GTTCCAGCATG--TCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCA 744521 Query 13750 TACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCT 13809 | || || | || ||||| | | || | ||||| | |||||| ||||| | Sbjct 744522 TCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCAT 744581 Query 13810 CTTTTATAATAATTG-TAATAATCTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAA 13866 | ||||| ||| | || |||| || | | | | || ||||| || | Sbjct 744582 ---TGATAATTATTTCTCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACA 744638 Query 13867 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 13926 | | || ||||||||||| || | ||||||||||| ||||||||||| || ||||||| Sbjct 744639 TCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATG 744698 Query 13927 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAA 13986 | | || ||||||| ||||||||| || | ||| ||||| | ||||| | || |||| Sbjct 744699 TGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAA 744758 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14046 ||| | || || |||||||||| ||| | ||||| ||| | | |||| ||||| Sbjct 744759 AGA---TGCCTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGT 744815 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 | ||||| | ||||| || | || || || | | || ||| |||||||| | Sbjct 744816 CCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGG 744875 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 |||| | | | ||||| | ||||| | | | ||||| || |||||| | || |||| Sbjct 744876 CATTGAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTAT 744935 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 |||||||||| ||||||||||| || || || || || ||| | || || | ||||| | Sbjct 744936 ACATTTCAGAATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTG 744995 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 | || ||||| | ||||| || |||| |||||||| ||||| |||||||| | Sbjct 744996 TCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTG 745055 Query 14287 CTGCAAAAAATGCC--AATATG 14306 ||||||| || || |||||| Sbjct 745056 CTGCAAAGAAAACCAGAATATG 745077 >seq5093 Length=2087638 Score = 141 bits (156), Expect = 9e-29 Identities = 294/431 (68%), Gaps = 10/431 (2%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 528962 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 529021 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| ||||||||| || | ||| |||| ||||| || || |||||| | Sbjct 529022 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAGCAG 529081 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 | | || || ||||||||| | ||||||||| | | | ||||||| Sbjct 529082 GTGCTTTC-TCTAGGGCAAACGCTGCAACACGTTCTCCATGAGTAACGTCTTTGTTCCCA 529140 Query 14052 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| | | || |||| | | || || || | | | |||||||||||| ||||| Sbjct 529141 ATCCA-ATACAAGACCCAAACTGCCTTCTTCTTGA-CACAGGCATTGTTTCAATGGCATT 529198 Query 14111 AAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 || | | | ||| |||| || | |||| ||| |||||||| | |||| || Sbjct 529199 GAAGAGAAACTCC----CTTTGTTATCTTTAATG--TGTGTCAATAAGGAGACTATTTAT 529252 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 |||| ||||||||||| ||||| || || || ||||| ||||| | ||| | Sbjct 529253 GTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 529312 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 || | ||| |||| ||| |||| ||||||| ||||| ||||||| ||||| Sbjct 529313 CTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 529372 Query 14291 AAAAAATGCCA 14301 ||| || |||| Sbjct 529373 AAAGAAAGCCA 529383 >seq7904 Length=13651311 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 3487596 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3487655 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || ||||||||||| || || || ||||||||||| | Sbjct 3487656 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 3487715 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 3487716 CTACGACACGTTCACC 3487731 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 3485447 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 3485505 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 3485506 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 3485565 Query 13643 CATAAAATCAAATGGATT 13660 |||||| |||||||| || Sbjct 3485566 CATAAAGTCAAATGGGTT 3485583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479649300621600