Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3971 253 2e-62 seq7904 114 1e-20 seq7605 82.4 7e-11 >seq3971 Length=4903791 Score = 253 bits (280), Expect = 2e-62 Identities = 504/740 (68%), Gaps = 16/740 (2%) Strand=Plus/Plus Query 13360 ACGCCCATTTTTTGATATTCAC--TAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCA 13417 || ||||| | ||||| || | | ||||| || ||||| ||||| || ||| || Sbjct 744349 ACTCCCATCCTCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCA 744403 Query 13418 GTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTA 13477 |||| ||||| |||||||| || ||||| || | | || || || | |||| | Sbjct 744404 GTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCA 744463 Query 13478 GTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCA 13537 |||| | | ||| || || | ||||||||| |||| ||||| | ||||||| Sbjct 744464 GTTCCAGCATG--TCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCA 744521 Query 13538 TACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCT 13597 | || || | || ||||| | | ||| | ||||| | |||||| ||||| | Sbjct 744522 TCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCAT 744581 Query 13598 CGTTTATAATAA-TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT 13656 | | || || ||||| | | || | || | | || ||||| || || Sbjct 744582 TGATAATTATTTCTCTTACTC-TCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATC 744640 Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 | || ||||||||||| || | ||||||||||| ||||||||||| || |||||||| Sbjct 744641 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTG 744700 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 | || ||||||| ||||||||| || | ||| ||||| | || || | || |||||| Sbjct 744701 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG 744760 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 | | || || |||||||||| ||| | ||||| ||| | | |||| ||||| Sbjct 744761 A---TGCCTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCC 744817 Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896 ||||| | ||||| || | || || || | | || ||| ||||| || ||| Sbjct 744818 CCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCA 744877 Query 13897 TTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 |||| | | |||| | ||||| | | | ||||| || |||||| | || |||||| Sbjct 744878 TTGAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATAC 744937 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 |||||||| |||||||||||||| || || || || ||| | ||||| | ||||||| | Sbjct 744938 ATTTCAGAATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTC 744997 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 || || || | ||||| || ||||||||||||| || || |||||||| ||| Sbjct 744998 ATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCT 745057 Query 14077 GCAAAAAATGCC--AATATG 14094 ||||| || || |||||| Sbjct 745058 GCAAAGAAAACCAGAATATG 745077 >seq7904 Length=13651311 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 3487596 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3487655 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || ||||||||||| || || || ||||||||||| | Sbjct 3487656 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 3487715 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 3487716 CTACGACACGTTCACC 3487731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 3485447 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 3485505 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 3485506 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 3485565 Query 13431 CATAAAATCGAATGGATT 13448 |||||| || ||||| || Sbjct 3485566 CATAAAGTCAAATGGGTT 3485583 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 3489772 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 3489831 Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 3489832 AAGCCATAGAAACAGCGGGCTTCTG 3489856 >seq7605 Length=1956976 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/207 (69%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 131373 AAAAGATG-CATAATGGAACAATAGAGTACACAAGTATAGATATGCATAAAGGTGTATCT 131431 |||||||| ||| |||| || || || | ||| || || ||| || || || || | Sbjct 927606 AAAAGATGTCATGATGGCACTATTGAATTCACGAGCATCGATGCACACAATGGCGTGGCC 927665 Query 131432 CCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTATAATAAAATGGTTAGGTGGT 131491 || || || || || ||||||||||| | || ||||| || || ||||| | ||| Sbjct 927666 CCATCAAGACGTGGTGATTTGGAAATACTTGGTTATTGCATGATCCAATGGCTTACTGGC 927725 Query 131492 AAATTGCCATGGGAAGATGATTTAAAAAATTGTAAATATGTAATGGAGTCAAAGATTAAA 131551 | | || ||||| ||| |||| ||| || ||||||||| | || || || |||| | Sbjct 927726 CATCTTCCTTGGGAGGATAATTTGAAAGATCCTAAATATGTTAGAGATTCCAAAATTAGA 927785 Query 131552 TACATGAACGATATTGTAAATTTAATG 131578 || | | |||||| || ||| ||| Sbjct 927786 TATAGAGAAAATATTGCAAGTTTGATG 927812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478510287507360