Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3971 343 2e-89 seq2336 116 5e-21 seq7904 114 2e-20 seq6727 111 2e-19 seq5016 89.7 7e-13 >seq3971 Length=4903791 Score = 343 bits (380), Expect = 2e-89 Identities = 644/940 (69%), Gaps = 26/940 (3%) Strand=Plus/Plus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774 |||| |||||| |||| || | |||| ||| ||| | || |||| |||||||| Sbjct 744299 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 744358 Query 41775 TTTGGTATTCACCC--ACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 | || || || ||| || | || || || || || ||||||| | ||| ||||| Sbjct 744359 TCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATT 744413 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| || ||||| || || || | ||| || |||| |||| ||| || Sbjct 744414 CTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCAT 744473 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 ||| ||||| | || || || || ||||| | |||||||| || ||| | Sbjct 744474 G--TCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATAGG 744531 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 || || || | ||| |||| || ||||| ||||| || || || | | || || Sbjct 744532 CTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTAT 744591 Query 42013 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 42072 ||||||| | || || ||| | | | ||||| ||||||| || || || Sbjct 744592 TTCTCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAA 744651 Query 42073 ATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 42132 ||| ||||| | |||||||||||| ||||| | ||| |||||||| ||||| || ||||| Sbjct 744652 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 744711 Query 42133 TAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTC 42192 || || || || || ||||| ||||| || ||||| | |||||||||| | ||||| Sbjct 744712 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTC 744768 Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTT 42249 | |||| |||||| | | || | || ||||| | | | |||| ||||| | Sbjct 744769 TGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTG 744828 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 |||||||| |||||||| || ||||||||||||||||| |||||||| | |||| | Sbjct 744829 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGAAA 744888 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 | |||| || |||||| | || || || || | |||||||||||| ||||| Sbjct 744889 TTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACATTTCAGAATG 744948 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 |||||||| ||||| || || || || ||||||| | ||| || || | ||| ||||| Sbjct 744949 TATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTC 745008 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | | |||||| || | || ||||| || ||||| || ||||| |||||||| || | Sbjct 745009 TTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAAC 745068 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG----A 42545 || | ||| |||||||| | | || | ||| || | ||||| || || | Sbjct 745069 CAGAATATGAGATATAAAATCTCTCTCCT-CGGGCTTCAGGGATTCC---CAGTGCCAAA 745124 Query 42546 TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACA 42605 || || || | || || || || | ||||| || || ||||| ||||| ||||||| Sbjct 745125 CGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACA 745184 Query 42606 TATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 | | |||||||||||| || | || ||||| || ||||| Sbjct 745185 TCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 745224 >seq2336 Length=9258750 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 5792327 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 5792268 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 5792267 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 5792209 >seq7904 Length=13651311 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| |||||||| ||||| || ||||| || || || || | Sbjct 3487596 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3487655 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 3487656 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 3487715 Query 42207 C 42207 | Sbjct 3487716 C 3487716 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | || || || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 3489765 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3489824 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || || |||||||| | ||| || |||| ||| |||||| | |||||| || Sbjct 3489825 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 3489884 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/163 (72%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 41697 AAATATCGGCATTTAT---GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT 41753 ||||| ||||| | | ||| |||| |||||| |||| || | |||| ||| ||| Sbjct 3485421 AAATAAGGGCATATCTTCAGTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG 3485480 Query 41754 CTTGA---GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAG 41810 | || ||||| |||||||| | || || || || || | || || || || |||| Sbjct 3485481 TTGGACTTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAG 3485540 Query 41811 TCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||||||||||| ||| ||||| ||||| || ||||| || || Sbjct 3485541 TCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 3485583 >seq6727 Length=1359887 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | Sbjct 309609 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 309668 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| || |||||||| || || || ||||| || || | | || | Sbjct 309669 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 309728 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 309729 CTGTTTCTTATACCAT 309744 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| ||||||||||||||||||||||| | || |||||||||| | ||| Sbjct 321322 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 321381 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 321382 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 321441 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 321442 TCCAGGTAAATAGC 321455 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| |||| | | ||| || ||||| || || || | || |||| Sbjct 315527 CATAGGTTTCATATGGGCCTTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCGCCAT 315586 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| || |||| |||||| || ||| ||||| | || ||||| || | Sbjct 315587 AATAAATAGTTTCAAAGATCTGCTTATTCAGTAATTGGGCTTCTGCACTCTCAAAAGGGT 315646 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | || ||||| || ||||| | ||||| || ||||| || || || | || | Sbjct 315647 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGAC 315706 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 315707 GTTTATTTGA 315716 >seq5016 Length=4328724 Score = 89.7 bits (98), Expect = 7e-13 Identities = 173/255 (68%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857 |||||| || ||||| ||| | || || || || ||| | || ||| | |||||| Sbjct 108976 TCCAGTAGAACCAAAACCTCCTGAACCCCTTTCGGTGTCATCCAAAGCTTGAATTTCTTC 108917 Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917 | |||||||||| | || | || | || ||||| || ||| ||| ||| | || || Sbjct 108916 TATTTCTGGATAAAAAATCCATTCGCAAATGAGCTGTGCAGTTCAATCACCCTTTTTGAC 108857 Query 39918 ATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 39977 | || | ||| ||| |||| || | || || | ||||| ||||||||||| Sbjct 108856 TTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 108797 Query 39978 GTCTATTACACCGCCTCCTATATCAATA---CCTTTTAGGGACAGACCAGACCTAGGAGC 40034 ||||| ||||| |||||| ||||||| |||| | || || |||| ||||| Sbjct 108796 ATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCATGGAGC 108737 Query 40035 TATTCTACCATAGCA 40049 || ||| ||||| || Sbjct 108736 TACTCTTCCATAACA 108722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671029099614240