Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq3971 343 2e-89
seq2336 116 5e-21
seq7904 114 2e-20
seq6727 111 2e-19
seq5016 89.7 7e-13
>seq3971
Length=4903791
Score = 343 bits (380), Expect = 2e-89
Identities = 644/940 (69%), Gaps = 26/940 (3%)
Strand=Plus/Plus
Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774
|||| |||||| |||| || | |||| ||| ||| | || |||| ||||||||
Sbjct 744299 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 744358
Query 41775 TTTGGTATTCACCC--ACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832
| || || || ||| || | || || || || || ||||||| | ||| |||||
Sbjct 744359 TCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATT 744413
Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892
||||| || ||||| || || || | ||| || |||| |||| ||| ||
Sbjct 744414 CTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCAT 744473
Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952
||| ||||| | || || || || ||||| | |||||||| || ||| |
Sbjct 744474 G--TCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATAGG 744531
Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012
|| || || | ||| |||| || ||||| ||||| || || || | | || ||
Sbjct 744532 CTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTAT 744591
Query 42013 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 42072
||||||| | || || ||| | | | ||||| ||||||| || || ||
Sbjct 744592 TTCTCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAA 744651
Query 42073 ATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 42132
||| ||||| | |||||||||||| ||||| | ||| |||||||| ||||| || |||||
Sbjct 744652 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 744711
Query 42133 TAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTC 42192
|| || || || || ||||| ||||| || ||||| | |||||||||| | |||||
Sbjct 744712 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTC 744768
Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTT 42249
| |||| |||||| | | || | || ||||| | | | |||| ||||| |
Sbjct 744769 TGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTG 744828
Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309
|||||||| |||||||| || ||||||||||||||||| |||||||| | |||| |
Sbjct 744829 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGAAA 744888
Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369
| |||| || |||||| | || || || || | |||||||||||| |||||
Sbjct 744889 TTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACATTTCAGAATG 744948
Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429
|||||||| ||||| || || || || ||||||| | ||| || || | ||| |||||
Sbjct 744949 TATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTC 745008
Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489
| | |||||| || | || ||||| || ||||| || ||||| |||||||| || |
Sbjct 745009 TTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAAC 745068
Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG----A 42545
|| | ||| |||||||| | | || | ||| || | ||||| || || |
Sbjct 745069 CAGAATATGAGATATAAAATCTCTCTCCT-CGGGCTTCAGGGATTCC---CAGTGCCAAA 745124
Query 42546 TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACA 42605
|| || || | || || || || | ||||| || || ||||| ||||| |||||||
Sbjct 745125 CGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACA 745184
Query 42606 TATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645
| | |||||||||||| || | || ||||| || |||||
Sbjct 745185 TCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 745224
>seq2336
Length=9258750
Score = 116 bits (128), Expect = 5e-21
Identities = 97/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148
|||||||| || || | ||| |||||||| |||||||| ||||| || || | ||| ||
Sbjct 5792327 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 5792268
Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207
||||| ||||||| ||||| ||||| || ||||| ||||||||||| || ||||||||
Sbjct 5792267 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 5792209
>seq7904
Length=13651311
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| || || | ||| |||||||| ||||| || ||||| || || || || |
Sbjct 3487596 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3487655
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||| || ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 3487656 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 3487715
Query 42207 C 42207
|
Sbjct 3487716 C 3487716
Score = 95.1 bits (104), Expect = 2e-14
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||| | || || || || | ||||||||||||||| ||||| |||||||| |||||
Sbjct 3489765 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3489824
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444
|| || || || |||||||| | ||| || |||| ||| |||||| | |||||| ||
Sbjct 3489825 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 3489884
Score = 87.8 bits (96), Expect = 2e-12
Identities = 118/163 (72%), Gaps = 6/163 (4%)
Strand=Plus/Plus
Query 41697 AAATATCGGCATTTAT---GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT 41753
||||| ||||| | | ||| |||| |||||| |||| || | |||| ||| |||
Sbjct 3485421 AAATAAGGGCATATCTTCAGTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG 3485480
Query 41754 CTTGA---GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAG 41810
| || ||||| |||||||| | || || || || || | || || || || ||||
Sbjct 3485481 TTGGACTTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAG 3485540
Query 41811 TCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 41853
|||||||||||| ||| ||||| ||||| || ||||| || ||
Sbjct 3485541 TCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 3485583
>seq6727
Length=1359887
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| |
Sbjct 309609 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 309668
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
||||||||||| |||| || |||||||| || || || ||||| || || | | || |
Sbjct 309669 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 309728
Query 71263 CTATTTCTAAGACCAT 71278
|| ||||| | |||||
Sbjct 309729 CTGTTTCTTATACCAT 309744
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||| ||||| ||||||||||||||||||||||| | || |||||||||| | |||
Sbjct 321322 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 321381
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || |||||||| ||||| || | ||| ||||| | | || || ||||||| ||
Sbjct 321382 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 321441
Query 72142 TCCAAGTATATGGC 72155
|||| ||| || ||
Sbjct 321442 TCCAGGTAAATAGC 321455
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440
|||| || || ||||| |||| | | ||| || ||||| || || || | || ||||
Sbjct 315527 CATAGGTTTCATATGGGCCTTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCGCCAT 315586
Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500
||||||| ||||| || |||| |||||| || ||| ||||| | || ||||| || |
Sbjct 315587 AATAAATAGTTTCAAAGATCTGCTTATTCAGTAATTGGGCTTCTGCACTCTCAAAAGGGT 315646
Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560
| | | || ||||| || ||||| | ||||| || ||||| || || || | || |
Sbjct 315647 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGAC 315706
Query 71561 TCTTATTAGA 71570
||||| ||
Sbjct 315707 GTTTATTTGA 315716
>seq5016
Length=4328724
Score = 89.7 bits (98), Expect = 7e-13
Identities = 173/255 (68%), Gaps = 3/255 (1%)
Strand=Plus/Minus
Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857
|||||| || ||||| ||| | || || || || ||| | || ||| | ||||||
Sbjct 108976 TCCAGTAGAACCAAAACCTCCTGAACCCCTTTCGGTGTCATCCAAAGCTTGAATTTCTTC 108917
Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917
| |||||||||| | || | || | || ||||| || ||| ||| ||| | || ||
Sbjct 108916 TATTTCTGGATAAAAAATCCATTCGCAAATGAGCTGTGCAGTTCAATCACCCTTTTTGAC 108857
Query 39918 ATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 39977
| || | ||| ||| |||| || | || || | ||||| |||||||||||
Sbjct 108856 TTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 108797
Query 39978 GTCTATTACACCGCCTCCTATATCAATA---CCTTTTAGGGACAGACCAGACCTAGGAGC 40034
||||| ||||| |||||| ||||||| |||| | || || |||| |||||
Sbjct 108796 ATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCATGGAGC 108737
Query 40035 TATTCTACCATAGCA 40049
|| ||| ||||| ||
Sbjct 108736 TACTCTTCCATAACA 108722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671029099614240
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