Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3971 257 1e-63 seq2336 102 7e-17 seq7904 82.4 7e-11 >seq3971 Length=4903791 Score = 257 bits (284), Expect = 1e-63 Identities = 580/866 (67%), Gaps = 28/866 (3%) Strand=Plus/Plus Query 12869 TCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAA 12928 || || ||||| || ||||| ||||| || |||| | |||||||| |||||||| Sbjct 744369 TCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTCCATAAAG 744423 Query 12929 TCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCT 12984 || || || || | || | || || || | || | ||| || | ||| Sbjct 744424 TCAAATGGGTTCTCTACTCTGAAAACC----TTGCTAAAACCCAGTTCCAGCATG--TCT 744477 Query 12985 GTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTAC 13044 ||| || |||||||| ||| | || ||||||| | || ||||| || || || || Sbjct 744478 GTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCTTCAC 744537 Query 13045 AGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCT 13104 ||||| || || || | || | | |||||| ||| || | ||||| ||| ||||| Sbjct 744538 AGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCT 744597 Query 13105 TATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACA 13164 || | | ||| | ||| | | || || || ||||||| || ||||||||||| Sbjct 744598 TACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAATCACA 744657 Query 13165 GTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCC 13224 ||| || || |||||||| || || || || || |||||||| || || ||||| || || Sbjct 744658 GTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCC 744717 Query 13225 TCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGC 13284 |||||| || | ||| ||||| | ||||| |||| | |||| || ||||| |||| Sbjct 744718 TCGTTTCTTGAGCCAGAATATCGATGCAAAATAACC---AGAAAAGATGCCTTCTGCTGC 744774 Query 13285 TGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGG 13343 ||||| ||| |||| | ||||||||| ||| | ||| | | ||||| | || Sbjct 744775 AGCAAAGACTA-CAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGCAAGG 744833 Query 13344 CCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttt 13403 |||| | ||| || | || || || ||| |||| || || || | | | | | Sbjct 744834 CCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGAAATTCCC 744893 Query 13404 tttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATAT 13463 |||| || ||| || ||||| || || || ||||||||||| ||||| || | Sbjct 744894 TTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACATTTCAGAATGTATGT 744953 Query 13464 TTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGT 13523 |||| || || |||||||| ||| | ||||| | || |||| | ||||||||| | Sbjct 744954 TTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTTGGC 745013 Query 13524 AAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTA 13583 ||||| || | |||||||| || ||||| || ||||| || ||||| ||| | || | Sbjct 745014 TAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAA 745073 Query 13584 TGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAATCTGGAAAATCT 13639 | || ||||| | | | || | ||| | | | ||| | || || Sbjct 745074 TATGAGATATAAAATCTCTCTCCTCGGGCTTCAGGGA----TTCCCAGTGCCAAACGTCC 745129 Query 13640 TTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATC 13699 || || | || |||||||| ||||||| || ||||| | ||||||||||||||| | Sbjct 745130 TTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGC 745189 Query 13700 CATATATCCTTATAAACAATGGGAAA 13725 || ||||| | || | ||||| || Sbjct 745190 CAGATATCATGGTACTCGATGGGGAA 745215 >seq2336 Length=9258750 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 5792329 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 5792270 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || |||||||| || || ||||| | Sbjct 5792269 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 5792210 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 5792209 CCACCACTCTTTCCCC 5792194 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 5801348 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 5801289 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 5801288 ATAAAATCAAAAGGATTTT 5801270 >seq7904 Length=13651311 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| || || || ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 3489772 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 3489830 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| | ||||||||| Sbjct 3489831 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 3489869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430913464903848