Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq3 122 8e-23 seq5016 107 2e-18 >seq3 Length=9913731 Score = 122 bits (134), Expect = 8e-23 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||||||| |||| ||||||||| Sbjct 3751753 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 3751694 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || || || || || |||| || |||||||| |||||||| ||||| ||||| || || Sbjct 3751693 CCCCAAGCTGAGAACCACGACCCAGACATCAAGGAGCACGTGAACTCCCTGGGGGAGAAT 3751634 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || | ||||| ||||| Sbjct 3751633 CTGAAGACCCTCAGGCTGAGGCTGCGGCGCTG 3751602 Score = 82.4 bits (90), Expect = 7e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 |||||| ||||| |||||||| ||||| ||||| |||||||||||||||||| | ||||| Sbjct 3749378 AGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAAGCCTACAT 3749319 Query 129164 GAC 129166 ||| Sbjct 3749318 GAC 3749316 >seq5016 Length=4328724 Score = 107 bits (118), Expect = 2e-18 Identities = 176/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | || |||| | | |||| | | || | |||||| || Sbjct 108945 TCGGTGTCATCCAAAGCTTGAATTTCTTCTATTTCTGGATAAAAAATCCATTCGCAAATG 108886 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 ||||| || | | || ||||| || || ||||| | || || ||||||||||| Sbjct 108885 AGCTGTGCAGTTCAATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGT 108826 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| || ||||| || || || ||||| || || || |||||| Sbjct 108825 ACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 108766 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509 ||||| | || | ||| || | ||| |||| | ||| || || |||| || ||| | Sbjct 108765 TGTTTTGCAGCCAAGCCTGACCATGGAGCTACTCTTCCATAACACCCAGAAGGCAGCGCT 108706 Query 5510 ATCAGAAGGTCAGT 5523 ||| ||| ||| || Sbjct 108705 ATCTGAATGTCCGT 108692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447676946546880