Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq3 122 8e-23
seq5016 107 2e-18
>seq3
Length=9913731
Score = 122 bits (134), Expect = 8e-23
Identities = 118/152 (78%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933
|| ||||| || ||||| || | ||||||||||| ||||||||| |||| |||||||||
Sbjct 3751753 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 3751694
Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993
|| || || || || |||| || |||||||| |||||||| ||||| ||||| || ||
Sbjct 3751693 CCCCAAGCTGAGAACCACGACCCAGACATCAAGGAGCACGTGAACTCCCTGGGGGAGAAT 3751634
Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025
|| || || || | || | ||||| |||||
Sbjct 3751633 CTGAAGACCCTCAGGCTGAGGCTGCGGCGCTG 3751602
Score = 82.4 bits (90), Expect = 7e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163
|||||| ||||| |||||||| ||||| ||||| |||||||||||||||||| | |||||
Sbjct 3749378 AGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAAGCCTACAT 3749319
Query 129164 GAC 129166
|||
Sbjct 3749318 GAC 3749316
>seq5016
Length=4328724
Score = 107 bits (118), Expect = 2e-18
Identities = 176/254 (69%), Gaps = 0/254 (0%)
Strand=Plus/Minus
Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329
|||||||| ||||| | || |||| | | |||| | | || | |||||| ||
Sbjct 108945 TCGGTGTCATCCAAAGCTTGAATTTCTTCTATTTCTGGATAAAAAATCCATTCGCAAATG 108886
Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389
||||| || | | || ||||| || || ||||| | || || |||||||||||
Sbjct 108885 AGCTGTGCAGTTCAATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGT 108826
Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449
|| || || ||||| |||| || ||||| || || || ||||| || || || ||||||
Sbjct 108825 ACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 108766
Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509
||||| | || | ||| || | ||| |||| | ||| || || |||| || ||| |
Sbjct 108765 TGTTTTGCAGCCAAGCCTGACCATGGAGCTACTCTTCCATAACACCCAGAAGGCAGCGCT 108706
Query 5510 ATCAGAAGGTCAGT 5523
||| ||| ||| ||
Sbjct 108705 ATCTGAATGTCCGT 108692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447676946546880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |