Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq4649 87.8 9e-13
seq5571 86.0 3e-12
seq8681 84.2 1e-11
seq7237 82.4 4e-11
>seq4649
Length=3067355
Score = 87.8 bits (96), Expect = 9e-13
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
||||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||
Sbjct 2366623 AATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACC 2366682
Query 11513 AACTGAGCTAATGGGCC 11529
||||||||||| ||||
Sbjct 2366683 AACTGAGCTAACCGGCC 2366699
Score = 86.0 bits (94), Expect = 3e-12
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2783066 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2783125
Query 11528 CCGT 11531
||||
Sbjct 2783126 CCGT 2783129
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2382948 GGATCGAACCCGCGACCTTAGCGTTATTAGCACTACGCTCTAACCAACTGAGCTAACCGG 2383007
Query 11528 CC 11529
||
Sbjct 2383008 CC 2383009
Score = 82.4 bits (90), Expect = 4e-11
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||| || |||||||||| ||||||| ||||||||||||| ||||||| ||| ||
Sbjct 2802472 TGGCCCGTGCGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACTACGCTCTAACCGAC 2802413
Query 11516 TGAGCTAATGGGCC 11529
|||||||| ||||
Sbjct 2802412 TGAGCTAACCGGCC 2802399
Score = 82.4 bits (90), Expect = 4e-11
Identities = 71/89 (80%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| |||| | | || |||||| | || ||||||| ||||||| |||||||||||||
Sbjct 2902263 AAAAAAACAACGAAGTGGCCCGTACGGGGGTCGAACCCGCGACCTTGGCGTTATTAGCAC 2902204
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| |||||||||||||| ||||
Sbjct 2902203 CACGCTCTAACCAACTGAGCTAACCGGCC 2902175
>seq5571
Length=12797210
Score = 86.0 bits (94), Expect = 3e-12
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||| ||| |||||| | |||||||||| ||||||| |||||||||||||
Sbjct 3548441 AAAAAAAAGAAAAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 3548500
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| |||||||||||||| ||||
Sbjct 3548501 CACGCTCTAACCAACTGAGCTAACCGGCC 3548529
>seq8681
Length=27971852
Score = 84.2 bits (92), Expect = 1e-11
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| || | |||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 27822633 AAAATGAACTCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 27822574
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||||||||||||| ||||
Sbjct 27822573 CTCTAACCAACTGAGCTAACCGGCC 27822549
>seq7237
Length=5934118
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 4295427 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4295368
Query 11528 CC 11529
||
Sbjct 4295367 CC 4295366
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261449374809424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |