Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4649 87.8 9e-13 seq5571 86.0 3e-12 seq8681 84.2 1e-11 seq7237 82.4 4e-11 >seq4649 Length=3067355 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 ||||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||| Sbjct 2366623 AATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACC 2366682 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 2366683 AACTGAGCTAACCGGCC 2366699 Score = 86.0 bits (94), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2783066 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2783125 Query 11528 CCGT 11531 |||| Sbjct 2783126 CCGT 2783129 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2382948 GGATCGAACCCGCGACCTTAGCGTTATTAGCACTACGCTCTAACCAACTGAGCTAACCGG 2383007 Query 11528 CC 11529 || Sbjct 2383008 CC 2383009 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| || |||||||||| ||||||| ||||||||||||| ||||||| ||| || Sbjct 2802472 TGGCCCGTGCGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACTACGCTCTAACCGAC 2802413 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 2802412 TGAGCTAACCGGCC 2802399 Score = 82.4 bits (90), Expect = 4e-11 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||| | | || |||||| | || ||||||| ||||||| ||||||||||||| Sbjct 2902263 AAAAAAACAACGAAGTGGCCCGTACGGGGGTCGAACCCGCGACCTTGGCGTTATTAGCAC 2902204 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 2902203 CACGCTCTAACCAACTGAGCTAACCGGCC 2902175 >seq5571 Length=12797210 Score = 86.0 bits (94), Expect = 3e-12 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| ||| |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 3548441 AAAAAAAAGAAAAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 3548500 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 3548501 CACGCTCTAACCAACTGAGCTAACCGGCC 3548529 >seq8681 Length=27971852 Score = 84.2 bits (92), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || | |||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 27822633 AAAATGAACTCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 27822574 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 27822573 CTCTAACCAACTGAGCTAACCGGCC 27822549 >seq7237 Length=5934118 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 4295427 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4295368 Query 11528 CC 11529 || Sbjct 4295367 CC 4295366 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261449374809424