Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq3483 188 1e-42 seq9904 122 1e-22 >seq3483 Length=10873343 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || |||| |||||| ||||| || |||| || |||||||| ||| Sbjct 3200870 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCATACT 3200929 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| |||||||| || || |||||||| |||||||||||||| ||||| Sbjct 3200930 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 3200989 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| || || || |||| ||||| |||||||| | Sbjct 3200990 ACCTCCTGCCCCACAGCAAACCGCAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 3201049 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 3201050 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 3201098 Score = 165 bits (182), Expect = 1e-35 Identities = 228/319 (71%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 8659 GAGCTCCTTATTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGAC 8718 |||||| || ||||| | ||| | | || ||||| || || ||||| | |||| Sbjct 3198828 GAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTGCAGAT 3198887 Query 8719 TAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCT 8778 |||||||| || | ||| | |||| ||| ||| ||||| ||||| || || ||||| Sbjct 3198888 GAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAAGTGCT 3198947 Query 8779 GGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGG 8838 || |||||||| | || || || || || || |||| || ||||| | ||| ||||| Sbjct 3198948 TGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAGAACGG 3199007 Query 8839 AGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8898 || || | || | ||| ||||||| |||||||| | ||||| |||||||| |||| Sbjct 3199008 TGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTACCAG 3199067 Query 8899 GAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGC 8958 | | | |||| ||||||||| |||||||| || || || || | || |||| Sbjct 3199068 AAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCTGCAGA 3199127 Query 8959 GATTTCCTTTTCTCCTGTT 8977 |||||||||||||||||| Sbjct 3199128 CATTTCCTTTTCTCCTGTT 3199146 Score = 127 bits (140), Expect = 3e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 3202024 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 3202083 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| |||||||| || ||| |||| || || ||||| | ||| |||||||||||||| Sbjct 3202084 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCGAACATCATGTTTGTGCCCTGGGGATC 3202143 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| | || | |||||| ||||||||||| Sbjct 3202144 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 3202181 Score = 107 bits (118), Expect = 3e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 10285 AGTCACCTTTGAC-CCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTT 10343 |||||||||| || |||||| ||||| || || || | ||| || |||||||| || Sbjct 3202633 AGTCACCTTTCACACCCAAG-GGAGTCGGGCAGTCATCAGGCACAGGAGGTAGGGCTCTG 3202691 Query 10344 GCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAG 10403 | ||||||||||| || ||||| |||||||||||| ||| | ||||| | ||||| Sbjct 3202692 GTATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAA 3202751 Query 10404 ATGGGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 | || || ||||||||||||| ||||| ||||| Sbjct 3202752 GTTGGTGGACTGTCAATCAAATGTGATCTGGCTGAA 3202787 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| || ||||| ||||| || | ||||||||| || || | Sbjct 3200277 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 3200336 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 | | ||| || |||||||| | || ||| || ||| || || | || ||| | Sbjct 3200337 AGTAATATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTATTTCTGGTCATGAATTT 3200394 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 ||| | || |||| || | |||||||||||| | | |||||||| | | |||| Sbjct 3200395 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATAC 3200454 Query 9500 GATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 |||||||||||||||| | || || ||||| || | ||| || | |||| Sbjct 3200455 GATTTTGGTACTGGAATTGTTTGTTGAAAAGTAGTTCTGGGTCAAATTTCAGTTTGAAGT 3200514 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584 | ||||| || | ||||| ||||| Sbjct 3200515 GATAGCCACTCAAGTGCTGTACATA 3200539 >seq9904 Length=12320365 Score = 122 bits (134), Expect = 1e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||||||||| ||| |||| || ||||| || ||||| || |||||||| | || | Sbjct 9345963 TCTTGACGATGTTAAAGCCCATCTCACCGCCAAATGTGCTCGGCTTCCAGTACTCTGGAG 9346022 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| | | ||| || ||||||||||| ||||| || | ||| | || | Sbjct 9346023 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCACCAATCTCTATCATAC 9346082 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||| | ||| ||| || |||||| | | | || | ||| ||||||| Sbjct 9346083 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGCCCAGGGTAGAACTCCA 9346142 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || |||||||| || || || | || || || || ||||| ||||||| Sbjct 9346143 ACGCGTCAATGTCTCCATACAGCTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCTG 9346199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708408566506560