Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8681 174 2e-39 seq4649 158 2e-34 >seq8681 Length=27971852 Score = 174 bits (192), Expect = 2e-39 Identities = 195/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| | | || || |||||||| || ||||| |||||||| || Sbjct 27488582 CGCTAAGCGTCATCGCAAGGTTTTGCGCGACAACATCCAGGGCATCACTAAGCCAGCCAT 27488523 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || |||||||| || || ||||||||| | ||||| | ||||||| |||| Sbjct 27488522 CCGACGCCTTGCTCGTCGCGGAGGTGTCAAGCGTATTTCTGGCCTTATCTATGAGGAGAC 27488463 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| | ||||| ||| ||| || | |||||| || || || || Sbjct 27488462 TCGCGGCGTTCTGAAGGTGTTCCTGGAGAACGTGATTCGTGATGCAGTCACTTACACGGA 27488403 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| || || | |||||| | |||||||| |||| || || || Sbjct 27488402 GCACGCCAAACGCAAGACCGTAACAGCAATGGATGTGGTCTATGCGCTGAAGCGACAGGG 27488343 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | |||| || ||||| Sbjct 27488342 ACGCACTCTTTACGGCTTTGG 27488322 Score = 159 bits (176), Expect = 5e-35 Identities = 194/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || ||||| |||| | | || || || || ||||||||||||||||||||||| | Sbjct 27392727 CGCCAAACGTCACCGCA-AGGTGTTGCGCGACAATATCCAAGGAATCACCAAGCCAGCCA 27392669 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || ||||||||| | ||||| | ||||||| |||| Sbjct 27392668 TCCGGCGCCTGGCTCGCCGCGGCGGCGTCAAGCGTATTTCTGGCCTCATCTATGAGGAGA 27392609 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| | ||||| | | || |||| |||||| || ||| || | Sbjct 27392608 CTCGCGGAGTGCTGAAGGTTTTCCTGGAAAATGTAATCCGCGATGCTGTCACCTACACGG 27392549 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||| ||||| ||||||| | || ||||| | || ||||| | Sbjct 27392548 AGCACGCCAAACGCAAGACGGTCACAGCCATGGACGTGGTGTATGCGCTCAAGCGTCAGG 27392489 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | ||||| || || Sbjct 27392488 GACGCACTCTGTATGGCTTCGG 27392467 Score = 145 bits (160), Expect = 1e-30 Identities = 191/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| |||||||||||||| || || |||||||| || | Sbjct 27409576 CGCCAAGCGTCACCGTAAAG-TCTTGCGAGATAACATCCAGGGTATTACCAAGCCTGCCA 27409634 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| || || || |||||||| | |||||| || | ||||| |||| Sbjct 27409635 TTCGGCGTCTTGCTCGGCGCGGCGGTGTCAAGCGCATTTCTGGACTGATTTATGAGGAGA 27409694 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | || || ||| ||| |||| ||| ||| | || || | Sbjct 27409695 CCCGCGGGGTTCTGAAGGTGTTTCTAGAGAACGTGATCCGTGACGCTGTTACTTACACGG 27409754 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || || |||||||| | ||||| || | ||||| || | Sbjct 27409755 AGCACGCCAAGCGCAAGACGGTAACAGCCATGGATGTGGTCTACGCTCTCAAACGACAGG 27409814 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | |||| || || || Sbjct 27409815 GACGCACTCTTTACGGCTTCGG 27409836 Score = 138 bits (152), Expect = 2e-28 Identities = 192/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || || ||||| ||||| || || || ||| | |||||| Sbjct 27235306 CTGCGGGATAACATCCAAGGTATTACTAAGCCGGCTATTCGGCGCCTTGCTAGACGTGGT 27235247 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || || |||| || ||| | ||||| |||| || | |||| | ||| | || Sbjct 27235246 GGGGTTAAACGAATCTCCGGTTTGATTTATGAGGAGACCCGAGGTGTTCTCAAGGTTTTT 27235187 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| ||||| | ||| || |||||||| || || ||||||||| Sbjct 27235186 CTGGAGAATGTGATCCGGGATGCGGTGACCTACACGGAGCACGCCAAGCGCAAGACTGTC 27235127 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | || || || | || || ||||| || | | || ||||| || Sbjct 27235126 ACTGCCATGGATGTGGTTTACGCGCTCAAGCGCCAAGGACGCACTCTATACGGTTTCGGC 27235067 Query 16694 AGTTAATCTTCTAATCAAACTTCGAATGG 16722 |||||| || || | |||| ||||| Sbjct 27235066 GGTTAATATTTTAGTTTTCCTTCTAATGG 27235038 Score = 136 bits (150), Expect = 6e-28 Identities = 186/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | || || ||||||||||| || || || ||||| ||||| Sbjct 27313108 GCTAAGCGCCATCGTAAGGTGCTCCGGGATAACATCCAGGGCATTACAAAGCCTGCTATT 27313167 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| |||||||| |||||||| | || || | | ||||| || | | Sbjct 27313168 CGCCGTTTGGCTCGGCGTGGTGGCGTCAAGCGCATTTCCGGTCTCATATATGAGGAAACT 27313227 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||| | ||| |||||| | || ||| || |||||| ||| Sbjct 27313228 CGAGGTGTGCTTAAGGTTTTCTTAGAGAACGTTATTCGAGACGCTGTCACCTATACGGAG 27313287 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || || |||||||| | |||||| | || || || | |||||||| || Sbjct 27313288 CATGCCAAGCGCAAAACTGTCACAGCTATGGATGTAGTGTACGCTCTAAAACGTCAGGGG 27313347 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 27313348 CGCACTCTGTATGGCTTCGG 27313367 >seq4649 Length=3067355 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | || || || |||||||| || |||||||||||||| ||| Sbjct 2935310 GCCAAGCGCCATCGCAAAGTGCTGCGCGACAACATCCAGGGTATCACCAAGCCAGCCATC 2935251 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| || || || || ||||| |||| || | ||||||| |||| Sbjct 2935250 CGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTATGAGGAGACC 2935191 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| || | || || || ||| |||||| Sbjct 2935190 CGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATTCGGGACGCAGTCACCTACACCGAG 2935131 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | |||||||| |||| || || ||| Sbjct 2935130 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTATGCGCTGAAGCGCCAGGGC 2935071 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||||| || || Sbjct 2935070 CGCACCCTTTATGGCTTCGG 2935051 Score = 123 bits (136), Expect = 4e-24 Identities = 184/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || || ||||| || ||||||||||| || || Sbjct 2206945 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAATATCCAGGGCATCACCAAGCCGGCCAT 2207004 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || ||||| |||| || | |||| || |||| Sbjct 2207005 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 2207064 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| |||| || ||| || || | || ||| | ||| || || Sbjct 2207065 CCGCGGGGTGCTGAAGGTCTTTCTGGAGAATGTGATTCGGGACGCTGTGACCTACACGGA 2207124 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || |||| || || || Sbjct 2207125 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTTTACGCGCTGAAGCGCCAGGG 2207184 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | || ||||| || Sbjct 2207185 TCGTACCCTCTACGGTTTCGG 2207205 Score = 123 bits (136), Expect = 4e-24 Identities = 184/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || || ||||| || ||||||||||| || || Sbjct 2211640 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAATATCCAGGGCATCACCAAGCCGGCCAT 2211581 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || ||||| |||| || | |||| || |||| Sbjct 2211580 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 2211521 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| |||| || ||| || || | || ||| | ||| || || Sbjct 2211520 CCGCGGGGTGCTGAAGGTCTTTCTGGAGAATGTGATTCGGGACGCTGTGACCTACACGGA 2211461 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || |||| || || || Sbjct 2211460 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTTTACGCGCTGAAGCGCCAGGG 2211401 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | || ||||| || Sbjct 2211400 TCGTACCCTCTACGGTTTCGG 2211380 Score = 114 bits (126), Expect = 2e-21 Identities = 182/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || || || || || |||||||||||||| || Sbjct 2163371 CGCTAAGCGCCACCGCAAAGTCCTGCGCGACAATATTCAGGGCATCACCAAGCCAGCCAT 2163430 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || || ||||| |||| || | | || || |||| Sbjct 2163431 CCGACGCCTGGCACGGCGTGGAGGCGTTAAGCGCATCTCAGGCCTTATATACGAGGAGAC 2163490 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || | ||| || |||| ||||| | ||| || || Sbjct 2163491 GCGCGGAGTTCTTAAGGTGTTTTTGGAGAATGTGATCCGCGATGCAGTTACCTACACGGA 2163550 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || ||||| ||||| || || |||||||| | || || || | || || || || Sbjct 2163551 GCATGCCAAACGCAAGACAGTGACGGCCATGGATGTGGTTTACGCGCTCAAGCGCCAGGG 2163610 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||||||||| Sbjct 2163611 TCGCACCCTCTATGGTTTTGG 2163631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79063200634932