Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3971 214 2e-50 seq2336 98.7 1e-15 seq7904 87.8 2e-12 seq7605 84.2 2e-11 >seq3971 Length=4903791 Score = 214 bits (236), Expect = 2e-50 Identities = 538/813 (66%), Gaps = 24/813 (3%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | |||||| | |||| Sbjct 744295 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCC 744354 Query 21182 ATTTTTTGATAATCAC--TAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATA 21239 || | ||||| || | | ||||| || || || || || ||||||| | ||| | Sbjct 744355 ATCCTCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAA 744409 Query 21240 TAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTG 21299 || |||||||| |||||||| || || | | || | || || |||||||||| Sbjct 744410 TATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCC- 744468 Query 21300 ATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGA 21359 | || ||| ||||| ||||| || || |||| ||||| |||||||| || | Sbjct 744469 AGCATG-TCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAA 744527 Query 21360 TCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAA 21419 | || ||||| | || | || | || | |||||| || || | | || Sbjct 744528 TAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAA 744587 Query 21420 TTATATTTATTA-----TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474 |||| | | ||| |||| | || | | | ||| | ||||| ||||||| Sbjct 744588 TTATTTCTCTTACTCTCTCCTCCA-GTGGTTTGTG--TACCAGG--TGTTTGAACATCAG 744642 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 || ||||||||||| || ||||| ||||| || || || | |||||| |||||||| | Sbjct 744643 GCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAG 744702 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| | ||||| || || | ||| ||||| || ||||| || |||||| Sbjct 744703 GCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG-- 744760 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 ||||| || | |||||||| | || | |||||||| || |||| |||||| ||| Sbjct 744761 -ATGCCTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCC 744819 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 ||||| | ||||| | |||||| | || | |||| || || ||||| || || Sbjct 744820 AATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATT 744879 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 | ||| | |||| | ||| ||||| ||||||||| Sbjct 744880 GAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACAT 744939 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 |||||||||||| |||||||| || || || || || | ||||| | || |||| || Sbjct 744940 TTCAGAATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTG-TCA 744998 Query 21835 T-TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 | ||||| || |||||| | ||||||||||||||||||| |||||||| || | Sbjct 744999 TCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTG 745058 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATC 21926 |||| || ||| |||| |||||||| || Sbjct 745059 CAAAGAAAACCAGAATATGAGATATAAAATCTC 745091 >seq2336 Length=9258750 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 21100 TTTATTCAGCTTTATAAAAATAT-TTATTTAAAAATCAGCATCTAATGAGAAAACATTAT 21158 ||||| || |||| || || | || |||||||||| ||||| || | ||| || |||| Sbjct 5801437 TTTATAGAGTTTTAAAACAAGAGGTTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTAT 5801378 Query 21159 CTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAAT 21218 || ||| || ||||| | | | ||||| || ||||| ||| || || |||| Sbjct 5801377 CTGTGGTTTCTGCCATAACTGCAAAACGCTGATACTCCGAAACTCGTTTCTCAAAGAAAT 5801318 Query 21219 TTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 |||| |||||||| || || || ||||||||||||||| |||||||| Sbjct 5801317 TTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAAGGATTTTC 5801269 >seq7904 Length=13651311 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 3485441 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 3485500 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 3485501 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 3485560 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||| || || Sbjct 3485561 TTCTCCATAAAGTCAAATGGGTTCTC 3485586 >seq7605 Length=1956976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 145475 AAAAGATG-CATAATGGAACCATAGAATTTACTAGCATCGATATGCATCGTGGAGCATGC 145533 |||||||| ||| |||| || || ||||| || ||||||||| || ||| | | Sbjct 927606 AAAAGATGTCATGATGGCACTATTGAATTCACGAGCATCGATGCACACAATGGCGTGGCC 927665 Query 145534 CCTTCTAGGCGAGGAGATTTAGAAATATTGGGTTATTGTATGATTACTTGGTTAGGTGGT 145593 || || || || || ||||| |||||| | |||||||| ||||| ||| | ||| Sbjct 927666 CCATCAAGACGTGGTGATTTGGAAATACTTGGTTATTGCATGATCCAATGGCTTACTGGC 927725 Query 145594 AAATTACCATGGGAGGATAATTTAAAAAATTGTAATTATG-TAATGAATTCAAAAGTAGA 145652 | | || |||||||||||||| ||| || ||| |||| || || | ||||| |||| Sbjct 927726 CATCTTCCTTGGGAGGATAATTTGAAAGATCCTAAATATGTTAGAGATTCCAAAATTAGA 927785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531813541673760