Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3971 98.7 3e-15 seq6727 91.5 4e-13 >seq3971 Length=4903791 Score = 98.7 bits (108), Expect = 3e-15 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || | ||||| | |||| ||| | | | | ||| Sbjct 744852 AAGAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAGAAGCTACCTATGGTGAA 744793 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAAT 22550 ||| || | | ||||||| | |||||||| ||||||||| |||||| | || Sbjct 744792 CGTGTTGTAGTCTTTGCTGCAGCAGAAGGCAT---CTTTTCTGGTT-ATTTTGCATCGAT 744737 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAG 22610 || ||||| || ||||| | | | ||||| || || || ||||| ||||| | ||||| Sbjct 744736 ATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAG 744677 Query 22611 CCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 | ||||||||||| | || |||||||| || Sbjct 744676 CAGAGATGAGGGTTTACACTGTGATTTTGCTTG 744644 >seq6727 Length=1359887 Score = 91.5 bits (100), Expect = 4e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || || | || ||||| || || |||||| Sbjct 319545 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAAACAGAAACAGGCACCCCGTATATG 319486 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 319485 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 319426 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 ||||| || || || || || | || |||||| Sbjct 319425 AGCAATCTGTGCACAGAAATAGTGGAGTACACC 319393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303134439462968