Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq4805 104 2e-17 seq12126 100 2e-16 seq6459 100 2e-16 seq5149 95.1 1e-14 seq11570 91.5 1e-13 seq7115 84.2 2e-11 >seq4805 Length=5228064 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || || Sbjct 4473410 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 4473469 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 4473470 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 4473529 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| ||| | ||||||| || || | || || Sbjct 4473530 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 4473589 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| ||||||||| | ||| | ||||||||| | || || || Sbjct 4473590 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 4473639 >seq12126 Length=7615049 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || || Sbjct 7457745 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 7457804 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 7457805 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 7457864 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||| | || | ||| ||||| ||| | ||||||| || || | || || Sbjct 7457865 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 7457924 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| ||||||||| | ||| | ||||||||| | || || || Sbjct 7457925 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 7457974 >seq6459 Length=16685579 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || || Sbjct 968730 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 968789 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 968790 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 968849 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||| | || | ||| ||||| ||| | ||||||| || || | || || Sbjct 968850 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 968909 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| ||||||||| | ||| | ||||||||| | || || || Sbjct 968910 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 968959 >seq5149 Length=2416856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || ||||| ||| || | || || Sbjct 1496344 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCCAGGTTGAACCC 1496285 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || | || || || ||||| || || ||||| ||||| | || ||| Sbjct 1496284 TCGGATA-TGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 1496226 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||||||||| || | ||| ||||| ||| | ||||||| || || | || || Sbjct 1496225 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 1496166 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| ||||||||| | ||| | ||||||||| | || || || Sbjct 1496165 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 1496115 >seq11570 Length=13276302 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| | ||||| || ||||| | ||||| ||| | || | || || Sbjct 11749151 AAAATGCAGATTTTCATGAAAACCCTTACGGGGCAGACCATCACCCTTGAGGCTGAACCC 11749092 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || || || ||||| | || |||| Sbjct 11749091 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTGAT 11749032 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| ||| | ||||||| || || | || || Sbjct 11749031 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 11748972 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| ||||||||| | ||| | ||||||||| | || || || Sbjct 11748971 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 11748922 >seq7115 Length=1795964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| |||||||| ||||| || | ||| || || || ||| | || || || Sbjct 163860 AAAATGCAGATTTTTGTGAAAACCCTAAGGGGGAAGACTATCACCCTTGAGGTTGAACCC 163919 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 163920 TCAGATACGGCAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 163979 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||| | ||| | ||||||| || || | || | Sbjct 163980 CAGCAAAGACTGATCTTTGCTGGCGAGCAACTGGAAGATGGACGTACTTTGTCTGACTGC 164039 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||||||||| ||||||||| | ||| | |||||||| Sbjct 164040 AACATTCAAAAGGAGTCTACTCTTCATCTTTTGTTGAGA 164078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425275966758880