Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4272 127 1e-24 seq4805 120 2e-22 seq5616 118 7e-22 seq3793 118 7e-22 seq12126 114 9e-21 seq6459 114 9e-21 seq5149 109 4e-19 seq11570 105 4e-18 seq7115 102 5e-17 seq1 102 5e-17 seq7459 100 2e-16 seq5126 100 2e-16 seq7016 95.1 8e-15 seq5860 91.5 1e-13 seq4138 87.8 1e-12 seq558 84.2 1e-11 seq8982 82.4 5e-11 >seq4272 Length=5342132 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 3077594 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 3077535 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 3077534 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 3077500 >seq4805 Length=5228064 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 4473625 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 4473566 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 4473565 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 4473506 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||||| || | || || || Sbjct 4473505 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 4473446 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 4473445 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 4473410 >seq5616 Length=3233282 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| |||||||| ||||| || ||||| || Sbjct 966951 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTTGT 967010 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 967011 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 967045 >seq3793 Length=23783011 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||| ||| |||||||||||||| || ||||| || Sbjct 2489184 AAGCCAGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGATAGGGATAGTGGGAATCTTGT 2489125 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2489124 TTATCCATTCATGCGCGTCACTAATTAGATGACGA 2489090 >seq12126 Length=7615049 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 7457960 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 7457901 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || | | ||| ||||| | || | ||||| || || Sbjct 7457900 TTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 7457841 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||||| || | || || || Sbjct 7457840 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 7457781 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 7457780 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 7457745 >seq6459 Length=16685579 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 968945 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 968886 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || | | ||| ||||| | || | ||||| || || Sbjct 968885 TTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 968826 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||||| || | || || || Sbjct 968825 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 968766 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 968765 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 968730 >seq5149 Length=2416856 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 1496129 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 1496188 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 1496189 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1496248 Query 38225 CATAATTTTTTGCTTCACATTCT-GGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 | || || ||| ||||| | | || |||| |||||| | | || || | Sbjct 1496249 CTGGATCTTGGCCTTTACATTTTCTGTCA-TATCCGAGGGTTCAACCTGGAGGGTGATGG 1496307 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || ||||| | |||||||||||| |||||||| || Sbjct 1496308 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 1496344 >seq11570 Length=13276302 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 11748936 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 11748995 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 11748996 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTCTC 11749055 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||| | || | || || || Sbjct 11749056 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAGCCTCAAGGGTGATGGT 11749115 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | ||||| | |||||||| ||| |||||||| || Sbjct 11749116 CTGCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 11749151 >seq7115 Length=1795964 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||||| | ||||||||| |||||||||||| ||| | ||||||||| |||| | || Sbjct 164075 CAACAAAAGATGAAGAGTAGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATC 164016 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| | || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 164015 TTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 163956 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||||| |||||| || | || ||||| Sbjct 163955 CTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCTCAAGGGTGATAGT 163896 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | ||||||||| || |||||||| || Sbjct 163895 CTTCCCCCTTAGGGTTTTCACAAAAATCTGCATTTT 163860 >seq1 Length=19716903 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| || | | || Sbjct 12236692 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACATCCATC 12236751 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || | | ||| ||||| | || | ||||| | || Sbjct 12236752 TTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTCATC 12236811 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | ||||| |||||| || | || || || Sbjct 12236812 CTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 12236871 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 12236872 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 12236907 >seq7459 Length=11907229 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||||||||||||||||||||||| ||| |||||||| ||| | || |||||| | Sbjct 11030429 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGTGACAGTGGGAATCTCAT 11030488 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| | ||||||||||||||| || Sbjct 11030489 TCATCCATTCATGCACATCACTAATTAGATGATGA 11030523 >seq5126 Length=8658521 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || ||||| |||| ||||| || |||||| ||| || || || ||||||||||| Sbjct 3006304 ACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGA 3006245 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || ||| | || || | ||||| || ||||| || | | || || || | || Sbjct 3006244 CAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 3006185 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || |||||| |||||| ||| ||| ||| ||||||| | || || | || || Sbjct 3006184 GATGCCTTCCTTGTCCTGAATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGAC 3006125 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||| ||| |||||||| |||||||| Sbjct 3006124 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3006077 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/237 (68%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | || | ||||| || || ||| |||||| || || ||||| |||||| Sbjct 3005847 CCACCTCTGAGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3005788 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || ||||||||||| || || | || || |||| || Sbjct 3005787 AGGGTACGACCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 3005728 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || || || ||| ||| ||||||| | || || | ||||| Sbjct 3005727 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 3005668 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCA-TGTTTTACAA 38326 || | || || || || || |||| || |||||||| ||||||| ||| | |||| Sbjct 3005667 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATTGTCTAACAA 3005611 >seq7016 Length=2642913 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||| || |||||||| ||||| || |||||| | Sbjct 1255213 AAGCCTTTTCCCTTGGCTGTGGTTTCACTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 1255272 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| | |||||||||||||||| || Sbjct 1255273 TCATCCATTCATGTGAGTCACTAATTAGATGAGGA 1255307 >seq5860 Length=1925457 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||| ||||||||| || ||||||| ||||| || |||||||| Sbjct 1725757 AAGCCCATTCCCTTGGATGTGGTTTCACTGTATAGTAGGTAGGGACAGTGGCAATCTCGT 1725698 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||| || | |||||||||||||||| || Sbjct 1725697 TCATCCATTCTTGTGTGTCACTAATTAGATGATGA 1725663 >seq4138 Length=9750826 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||| | | ||||||||| |||||||||||||||||| ||||||||| | | | || Sbjct 3988015 CAACGCAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTCCATCCATC 3987956 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || |||| || | ||| ||| | | || | ||||| || || Sbjct 3987955 TTCCAGTTGCTTGCCAACAAAGATCCCTCTTTGCTGAGCAGGAGGAATTCCTTCCTTATC 3987896 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| ||||||| || | || || || Sbjct 3987895 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGTTTCAACCTCGAGGGTGATGGT 3987836 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | |||||||||||| |||||||| || Sbjct 3987835 CTTCCCCATAAGGGTTTTCACGAAAATCTGCATTTT 3987800 >seq558 Length=6924777 Score = 84.2 bits (92), Expect = 1e-11 Identities = 70/86 (81%), Gaps = 5/86 (6%) Strand=Plus/Minus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 |||||||||||| |||||| ||||||||||| ||||| || |||| | | |||| Sbjct 6909171 TTCCCTTGGCTGAGGTTTCACTAGATAGTAGGTAGGGACAGTGGGGATCTTGGTCATCCA 6909112 Query 25964 TTCATGCGCGTCACTAATTAGATGAC 25989 |||||||| ||||||||||| ||||| Sbjct 6909111 TTCATGCGTGTCACTAATTAAATGAC 6909086 >seq8982 Length=576967 Score = 82.4 bits (90), Expect = 5e-11 Identities = 67/79 (85%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTAT--CGGTCTC 20004 |||||||||||||||||||||||||||||||| || ||||||||| |||| |||||| Sbjct 296587 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAGTACTTGTTGACTATTGAGGTCTC 296528 Query 20005 GCGGTAATATTTAGCCTTA 20023 | | | |||||| ||||| Sbjct 296527 -CTGCAGTATTTAACCTTA 296510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334893625614044