Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3971 327 1e-84 seq6727 113 6e-20 seq2336 111 2e-19 seq7904 100 4e-16 seq10655 89.7 7e-13 >seq3971 Length=4903791 Score = 327 bits (362), Expect = 1e-84 Identities = 640/938 (68%), Gaps = 22/938 (2%) Strand=Plus/Plus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 32370 |||| |||||| |||| | | |||| ||| ||| | || |||| |||||||| Sbjct 744299 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 744358 Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 | || || || ||| || | ||| ||| | |||| | ||| | ||| ||||| | Sbjct 744359 TCTGATACTCTCCCTTACTCTCTTCTCAAAGA--AGTTCGTCTTTC-AGTGAAATATTCT 744415 Query 32431 CCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 32490 |||| || || ||||| || || | ||| || |||| |||| ||| || Sbjct 744416 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATG- 744474 Query 32491 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 32550 ||| ||||| ||||| || || || ||||| | |||||||| || ||| | | Sbjct 744475 -TCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 744533 Query 32551 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 32610 | || || | ||| |||| || ||||| ||||| || || || | | || || Sbjct 744534 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTT 744593 Query 32611 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 32670 ||||||| | || || ||| | | | ||||| ||||||| || || |||| Sbjct 744594 CTCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAAT 744653 Query 32671 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 32730 | ||||||| |||||| ||||| ||||| | ||| |||||||| ||||| || ||||| | Sbjct 744654 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCA 744713 Query 32731 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 32790 | || || || || ||||| ||||| || ||||| | |||||||||| | |||||| Sbjct 744714 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCTG 744770 Query 32791 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTT 32847 |||| |||||| | | || | || ||||| | | | |||| ||||| | Sbjct 744771 CTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGCA 744830 Query 32848 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 32907 |||||||| |||||||| || ||||||||||| || || || ||||| | |||| | | Sbjct 744831 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGAAATT 744890 Query 32908 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 32967 |||| || |||||| | || || ||||| | |||||||||||| ||||| | Sbjct 744891 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACATTTCAGAATGTA 744950 Query 32968 TGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTG 33027 ||||||| ||||| ||||| || || |||| || | || || || ||||| |||||| Sbjct 744951 TGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTT 745010 Query 33028 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087 | |||||| || | || |||||||| ||||| || ||||| |||||||| || ||| Sbjct 745011 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 745070 Query 33088 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----ATA 33143 | ||| |||||||| | | || || || | || ||||| || || | Sbjct 745071 GAATATGAGATATAAAATCTCTCTCCTCGGGCTTCAG-GGATTCC---CAGTGCCAAACG 745126 Query 33144 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 33203 || || || | ||||| || || | ||||| || || || || ||||| |||||||| Sbjct 745127 TCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 745186 Query 33204 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 | |||||| ||||| || | || || || || ||||| Sbjct 745187 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 745224 >seq6727 Length=1359887 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | Sbjct 309609 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 309668 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 309669 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 309728 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 309729 CTGTTTCTTATACCATA 309745 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| ||||||||||||||||||||||| | || |||||||||| | Sbjct 321318 CTCCACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 321377 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 321378 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 321437 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 321438 AGGCTCCAGGTAAATAGC 321455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 338137 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 338196 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 338197 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 338256 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 338257 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 338302 >seq2336 Length=9258750 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 5792327 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 5792268 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 5792267 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 5792209 >seq7904 Length=13651311 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 3489765 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3489824 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||| || || ||||| || | || || |||||||| |||||| | |||||| || Sbjct 3489825 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 3489884 >seq10655 Length=1710 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||| | ||| | || | || || ||||| || | || |||||||| ||||||||| Sbjct 623 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAAC 564 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || || |||||||| ||||| || || ||||| |||| || || || || || || Sbjct 563 CACTTCTCAGAAAGAAGATTATATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATC 504 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || || | || | ||| ||||| || || ||||||||| Sbjct 503 CCAACAGATACTCTCATCAACATATGTTGTGGTCTTTCA 465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633528052670400