Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2558 104 2e-17 seq6460 100 2e-16 >seq2558 Length=10987700 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||| |||||| | || || ||| ||||||| | || || ||| | | Sbjct 486257 ATGCAGATCTTTACAAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 486316 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| ||| ||| |||| |||| ||| ||||| || || || |||||||| Sbjct 486317 GACACTATTGAGAACGTCA---AAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGA 486372 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || |||||||||||||| | ||||||| | |||| | || || Sbjct 486373 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCACACTCTCTCAGACTA 486432 Query 25175 CAATATTCAAAAAGAATCCAC 25195 ||| || || ||||| ||||| Sbjct 486433 CAACATCCACAAAGAGTCCAC 486453 >seq6460 Length=10151297 Score = 100 bits (110), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||||| || ||||| ||||| | || || ||| ||||||| | || || | Sbjct 3934299 ACGCAAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCG 3934240 Query 25051 AGTCGTCTGACACTATCGAG--TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCC 25108 || | |||||| || ||| | || ||| |||| ||| |||| || || || || Sbjct 3934239 AGCCCAGTGACACCATTGAGAATGACA-AAGACAAAATTCAAC-ACAAGGAGGGTATCCC 3934182 Query 25109 ACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGG 25168 ||||||||| |||| | || |||||||||||||| | ||||||| |||||| | Sbjct 3934181 ACCTGACCAGCAGCATCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTC 3934122 Query 25169 CGATTACAATATTCAAAAAGAATCCACGCTACA 25201 || ||||| || || ||||| ||||| || || Sbjct 3934121 AGACTACAACATCCAGAAAGAGTCCACCCTGCA 3934089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433258689728060