Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3971 271 8e-68 seq5093 136 4e-27 seq7904 96.9 4e-15 >seq3971 Length=4903791 Score = 271 bits (300), Expect = 8e-68 Identities = 466/671 (69%), Gaps = 9/671 (1%) Strand=Plus/Plus Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| ||||||| | ||||||| ||||| | | ||| |||| | ||| ||| Sbjct 744590 ATTTCTCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCA 744649 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 || || |||||||| || |||| || || || | ||||| ||||| | || || Sbjct 744650 AAATCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 744708 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | ||||||||||||||||||||| ||||| || |||||| ||||||||| | | || Sbjct 744709 CATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCC 744765 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||| | || ||||| | |||| |||||| || | | || || | ||||| Sbjct 744766 TTCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCA 744825 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 | || |||||||| || || ||||| | |||||| | ||||| || || || | || Sbjct 744826 GTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAG 744885 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGA--ATACATTTCA 93394 | || | || | | |||| |||||| || || || || || | |||||||||| Sbjct 744886 AAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAAT--ACGGAAACTATACATTTCA 744943 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 ||||| | || || || ||||||||||| || ||||||| | ||||| || ||||| Sbjct 744944 GAATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGA 745003 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 |||||||| ||||| ||| || | |||||||| ||||| ||||| ||||||||| Sbjct 745004 ACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAG 745063 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574 ||| ||| ||||| |||||||| | |||| || || || ||||| | | Sbjct 745064 AAAACCAGAATATGAGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAA 745123 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | || || || || || || || ||| | ||||| || || ||||| || || || ||| Sbjct 745124 ACGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATAC 745183 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTT 93694 || | ||| || || || || | || || || |||||||| || ||||| ||| | Sbjct 745184 ATCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAAGCGGCAGGGGTTTTCTCTC 745243 Query 93695 AGTAACGGCTC 93705 || | |||||| Sbjct 745244 AGCAGCGGCTC 745254 >seq5093 Length=2087638 Score = 136 bits (150), Expect = 4e-27 Identities = 374/564 (66%), Gaps = 12/564 (2%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149 ||| ||||||| |||||||| || || | || || || | ||||| ||||| | Sbjct 528961 GCAAGCAAAGTAACAGTGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGA 529019 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | ||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 529020 GGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAGC 529079 Query 93210 aTATACCTTC-CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 | | | ||| | || ||||| || ||| |||||| || | | || || | Sbjct 529080 AGGTGCTTTCTCTAGG--GCAAACGCTGCAACACGTTCTCCATGAGTAACGTCTTTGTTC 529137 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 | ||||| | || ||||| | || || ||||| | ||| || | |||||| || || Sbjct 529138 CCAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCA 529196 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 || || || || ||| || | |||| |||| ||| | || | ||| || Sbjct 529197 TTGAAGAG--AAACTCCCT--TTGTTATCTTTAATGTGTGT--CAATAAGGAGACTATTT 529250 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 || |||| ||| | || || || ||||||||||| || ||||| || | ||| || Sbjct 529251 ATGTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTA 529310 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 ||||| | ||||||| |||| || || | ||||||| ||||| ||||| ||||| Sbjct 529311 ATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCT 529370 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAA 93568 ||||| ||||||| ||| |||||||| | | || ||| || || ||||| Sbjct 529371 GCAAAGAAAGCCAGAATACAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAG 529430 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 | | | || || || || || ||||| | | | |||| || || | ||| |||| Sbjct 529431 TGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTC 529490 Query 93629 TTGTACATATCCCATATGTCTTGA 93652 || ||| | | ||| || || ||| Sbjct 529491 TTATACGTTTTCCAAATATCATGA 529514 >seq7904 Length=13651311 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| ||||| || ||| Sbjct 3487616 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 3487675 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||| ||||| || || |||||||| || ||||| || || | |||||| Sbjct 3487676 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACACGTTC 3487728 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| || || || | ||| ||||||||||||||| | || ||||| || Sbjct 3489765 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3489824 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct 3489825 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 3489884 Query 93475 TAC 93477 || Sbjct 3489885 CAC 3489887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556769446985760